Variant report

Variant	rs2418319
Chromosome Location	chr9:117619759-117619760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10114224	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10115186	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10116032	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10117997	0.87[EUR][1000 genomes]
rs10122171	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10491581	0.81[EUR][1000 genomes]
rs10817677	0.88[EUR][1000 genomes]
rs10982415	0.85[EUR][1000 genomes]
rs10982417	0.81[EUR][1000 genomes]
rs10982420	0.84[ASN][1000 genomes]
rs10982421	0.84[ASN][1000 genomes]
rs10982422	0.84[ASN][1000 genomes]
rs10982423	0.84[ASN][1000 genomes]
rs10982424	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982425	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982427	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982431	0.84[EUR][1000 genomes]
rs10982433	0.83[EUR][1000 genomes]
rs10982434	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982436	0.82[EUR][1000 genomes]
rs10982438	0.82[EUR][1000 genomes]
rs11554257	0.85[CHD][hapmap];0.93[JPT][hapmap]
rs12237931	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12337233	0.89[EUR][1000 genomes]
rs12340243	0.86[EUR][1000 genomes]
rs1407306	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1419134	0.87[EUR][1000 genomes]
rs16931913	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1885385	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2093403	0.82[EUR][1000 genomes]
rs2145929	0.88[CEU][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs2145931	0.83[EUR][1000 genomes]
rs2418318	0.84[ASN][1000 genomes]
rs2418320	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418321	0.84[EUR][1000 genomes]
rs4262377	0.82[EUR][1000 genomes]
rs4348576	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56136096	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56235203	0.84[ASN][1000 genomes]
rs6478111	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7022618	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7027093	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7027268	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7029554	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7032906	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7043587	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7468800	0.81[EUR][1000 genomes]
rs7865494	0.88[EUR][1000 genomes]
rs7866221	0.84[EUR][1000 genomes]
rs7866379	0.84[EUR][1000 genomes]
rs7866387	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7872350	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7873916	0.87[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:117617400-117620000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr9:117617800-117619800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:117617800-117620000	Enhancers	NHLF	lung
5	chr9:117618600-117619800	Enhancers	HSMMtube	muscle
6	chr9:117619200-117619800	Enhancers	HSMM	muscle
7	chr9:117619200-117620000	Enhancers	NHDF-Ad	bronchial
8	chr9:117619200-117620000	Enhancers	Osteobl	bone
9	chr9:117619200-117623600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:117619200-117626800	Weak transcription	Fetal Stomach	stomach
11	chr9:117619400-117620000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:117619400-117622200	Weak transcription	Adipose Nuclei	Adipose
13	chr9:117619600-117619800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:117619600-117620000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links