Variant report

Variant	rs10982427
Chromosome Location	chr9:117613696-117613697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117611299..117613789-chr9:117615464..117617211,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10114224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10115186	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10116032	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10117997	0.86[EUR][1000 genomes]
rs10122171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10491581	0.82[EUR][1000 genomes]
rs1075074	0.82[EUR][1000 genomes]
rs10817677	0.87[EUR][1000 genomes]
rs10982415	0.86[EUR][1000 genomes]
rs10982420	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982421	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982422	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982423	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982424	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982425	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982431	0.81[EUR][1000 genomes]
rs10982433	0.80[EUR][1000 genomes]
rs10982434	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10982436	0.83[EUR][1000 genomes]
rs10982438	0.83[EUR][1000 genomes]
rs11554257	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11560576	0.82[EUR][1000 genomes]
rs12237931	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12238227	0.81[EUR][1000 genomes]
rs12337233	0.88[EUR][1000 genomes]
rs12340243	0.87[EUR][1000 genomes]
rs1407306	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1419134	0.86[EUR][1000 genomes]
rs16931895	0.83[EUR][1000 genomes]
rs16931913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1885385	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2093403	0.83[EUR][1000 genomes]
rs2145929	0.88[CEU][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs2145930	0.81[EUR][1000 genomes]
rs2145931	0.80[EUR][1000 genomes]
rs2418318	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2418319	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2418320	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2418321	0.81[EUR][1000 genomes]
rs4262377	0.85[ASN][1000 genomes]
rs4348576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56136096	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56235203	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6478111	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7022618	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7027093	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7027268	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7029554	0.81[EUR][1000 genomes]
rs7032906	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7043587	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7865494	0.87[EUR][1000 genomes]
rs7866221	0.83[EUR][1000 genomes]
rs7866379	0.83[EUR][1000 genomes]
rs7866387	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7872350	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7873916	0.87[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea
2	chr9:117610400-117614200	Weak transcription	Fetal Intestine Small	intestine
3	chr9:117611200-117614000	Enhancers	HSMM	muscle
4	chr9:117611200-117615000	Enhancers	NHDF-Ad	bronchial
5	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:117611800-117614800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:117611800-117615800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:117612000-117614000	Enhancers	HSMMtube	muscle
9	chr9:117612000-117614600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:117612000-117615600	Enhancers	Osteobl	bone
11	chr9:117612400-117614600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr9:117612400-117615000	Enhancers	Adipose Nuclei	Adipose
13	chr9:117612400-117615600	Enhancers	NHLF	lung
14	chr9:117613000-117614600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr9:117613000-117616600	Enhancers	Stomach Mucosa	stomach
16	chr9:117613200-117613800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:117613200-117614200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:117613200-117614200	Enhancers	Fetal Lung	lung
19	chr9:117613200-117614400	Enhancers	Dnd41	blood
20	chr9:117613200-117615000	Enhancers	Fetal Stomach	stomach
21	chr9:117613200-117615800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr9:117613400-117613800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:117613400-117614000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:117613400-117614000	Enhancers	Gastric	stomach
25	chr9:117613400-117614000	Enhancers	Lung	lung
26	chr9:117613400-117614400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:117613400-117614600	Enhancers	Small Intestine	intestine
28	chr9:117613400-117615000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:117613400-117615000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:117613400-117615600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:117613400-117615600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr9:117613400-117617000	Enhancers	Fetal Intestine Large	intestine
33	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr9:117613600-117613800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:117613600-117614000	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr9:117613600-117615000	Enhancers	Hela-S3	cervix
37	chr9:117613600-117615600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:117613600-117615600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:117613600-117616800	Weak transcription	HUVEC	blood vessel

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