Variant report

Variant	rs10982434
Chromosome Location	chr9:117621753-117621754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117615331..117617300-chr9:117620476..117622767,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10114224	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10115186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116032	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117997	0.88[EUR][1000 genomes]
rs10122171	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10491581	0.82[EUR][1000 genomes]
rs10817677	0.89[EUR][1000 genomes]
rs10982415	0.86[EUR][1000 genomes]
rs10982420	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982421	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982422	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982423	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982424	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982425	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982427	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10982431	0.83[EUR][1000 genomes]
rs10982433	0.82[EUR][1000 genomes]
rs10982436	0.83[EUR][1000 genomes]
rs10982438	0.83[EUR][1000 genomes]
rs11554257	0.93[JPT][hapmap]
rs12237931	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12337233	0.88[EUR][1000 genomes]
rs12340243	0.87[EUR][1000 genomes]
rs1407306	0.82[EUR][1000 genomes]
rs1419134	0.86[EUR][1000 genomes]
rs16931895	0.81[EUR][1000 genomes]
rs16931913	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885385	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2093403	0.83[EUR][1000 genomes]
rs2145929	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2145931	0.82[EUR][1000 genomes]
rs2418318	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2418319	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418321	0.83[EUR][1000 genomes]
rs4262377	0.81[EUR][1000 genomes]
rs4348576	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56136096	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56235203	0.86[ASN][1000 genomes]
rs6478111	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7022618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7027093	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027268	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7029554	0.81[EUR][1000 genomes]
rs7032906	0.82[EUR][1000 genomes]
rs7043587	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7865494	0.89[EUR][1000 genomes]
rs7866221	0.85[EUR][1000 genomes]
rs7866379	0.85[EUR][1000 genomes]
rs7866387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872350	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7873916	0.88[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:117619200-117623600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:117619200-117626800	Weak transcription	Fetal Stomach	stomach
4	chr9:117619400-117622200	Weak transcription	Adipose Nuclei	Adipose
5	chr9:117619800-117623800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:117619800-117626800	Weak transcription	HSMM	muscle
7	chr9:117620000-117622200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:117620200-117622800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:117621400-117622000	Enhancers	Fetal Kidney	kidney

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