Variant report

Variant	rs4348576
Chromosome Location	chr9:117615062-117615063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10114224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10115186	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10116032	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10117997	0.87[EUR][1000 genomes]
rs10122171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10491581	0.83[EUR][1000 genomes]
rs1075074	0.81[EUR][1000 genomes]
rs10817677	0.88[EUR][1000 genomes]
rs10982415	0.85[EUR][1000 genomes]
rs10982420	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982421	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982422	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982423	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982424	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982425	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982431	0.82[EUR][1000 genomes]
rs10982433	0.81[EUR][1000 genomes]
rs10982434	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982436	0.82[EUR][1000 genomes]
rs10982438	0.82[EUR][1000 genomes]
rs11554257	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11560576	0.81[EUR][1000 genomes]
rs12237931	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12337233	0.87[EUR][1000 genomes]
rs12340243	0.86[EUR][1000 genomes]
rs1407306	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1419134	0.85[EUR][1000 genomes]
rs16931895	0.82[EUR][1000 genomes]
rs16931913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1885385	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2093403	0.82[EUR][1000 genomes]
rs2145929	0.86[EUR][1000 genomes]
rs2145931	0.81[EUR][1000 genomes]
rs2418318	0.93[ASN][1000 genomes]
rs2418319	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2418320	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2418321	0.82[EUR][1000 genomes]
rs4262377	0.84[ASN][1000 genomes]
rs56136096	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56235203	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6478111	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7022618	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7027093	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7027268	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7032906	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7043587	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7865494	0.88[EUR][1000 genomes]
rs7866221	0.84[EUR][1000 genomes]
rs7866379	0.84[EUR][1000 genomes]
rs7866387	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7872350	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7873916	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea
2	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:117611800-117615800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:117612000-117615600	Enhancers	Osteobl	bone
5	chr9:117612400-117615600	Enhancers	NHLF	lung
6	chr9:117613000-117616600	Enhancers	Stomach Mucosa	stomach
7	chr9:117613200-117615800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:117613400-117615600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:117613400-117615600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr9:117613400-117617000	Enhancers	Fetal Intestine Large	intestine
11	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:117613600-117615600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:117613600-117615600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:117613600-117616800	Weak transcription	HUVEC	blood vessel
15	chr9:117614000-117615400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr9:117614000-117615800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:117614000-117616800	Weak transcription	Gastric	stomach
18	chr9:117614200-117616600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr9:117614200-117617000	Enhancers	Duodenum Mucosa	Duodenum
20	chr9:117614200-117617400	Enhancers	Fetal Intestine Small	intestine
21	chr9:117614400-117615400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:117614400-117617000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr9:117614400-117617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr9:117614400-117618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:117614600-117615400	Weak transcription	Small Intestine	intestine
26	chr9:117614600-117617400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:117614600-117617800	Weak transcription	HSMM	muscle
28	chr9:117614600-117618600	Weak transcription	HSMMtube	muscle
29	chr9:117614600-117618800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:117614800-117615600	Enhancers	Fetal Muscle Trunk	muscle
31	chr9:117614800-117617800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:117615000-117615400	Weak transcription	Adipose Nuclei	Adipose
33	chr9:117615000-117617600	Weak transcription	NHDF-Ad	bronchial
34	chr9:117615000-117618800	Weak transcription	Fetal Stomach	stomach

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