Variant report

Variant	rs12337233
Chromosome Location	chr9:117587413-117587414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117586832..117588527-chr9:117590485..117592539,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10114224	0.88[EUR][1000 genomes]
rs10115186	0.89[EUR][1000 genomes]
rs10116032	0.89[EUR][1000 genomes]
rs10117997	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122171	0.89[EUR][1000 genomes]
rs10817677	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982414	0.82[ASN][1000 genomes]
rs10982415	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982427	0.88[EUR][1000 genomes]
rs10982434	0.88[EUR][1000 genomes]
rs12237626	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12340243	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407306	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1419134	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16931913	0.88[EUR][1000 genomes]
rs1885385	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2145929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418319	0.89[EUR][1000 genomes]
rs2418320	0.89[EUR][1000 genomes]
rs4348576	0.87[EUR][1000 genomes]
rs56136096	0.87[EUR][1000 genomes]
rs7022618	0.88[EUR][1000 genomes]
rs7027093	0.88[EUR][1000 genomes]
rs7027268	0.88[EUR][1000 genomes]
rs7029554	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032906	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7043587	0.89[EUR][1000 genomes]
rs7865494	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866221	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866379	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866387	0.89[EUR][1000 genomes]
rs7868351	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7873916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117582400-117587600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:117583200-117587600	Weak transcription	Placenta	Placenta
3	chr9:117586000-117587800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:117586000-117588400	Enhancers	NHDF-Ad	bronchial
5	chr9:117586200-117587800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:117586200-117588200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:117586400-117588200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:117587000-117587600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:117587000-117587800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:117587200-117589200	Enhancers	Fetal Intestine Small	intestine

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