Variant report

Variant	rs7868351
Chromosome Location	chr9:117584082-117584083
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10117997	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10491581	0.89[ASN][1000 genomes]
rs1075074	0.88[ASN][1000 genomes]
rs10817677	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982414	0.97[ASN][1000 genomes]
rs10982415	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982417	0.84[ASN][1000 genomes]
rs10982431	0.84[ASN][1000 genomes]
rs10982433	0.84[ASN][1000 genomes]
rs10982436	0.84[ASN][1000 genomes]
rs10982438	0.84[ASN][1000 genomes]
rs11554257	0.92[MEX][hapmap]
rs11560576	0.88[ASN][1000 genomes]
rs12237626	1.00[ASN][1000 genomes]
rs12238227	0.89[ASN][1000 genomes]
rs12337233	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12340243	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1407306	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1419134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1590256	0.89[ASN][1000 genomes]
rs16931895	0.89[ASN][1000 genomes]
rs1885385	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2093403	0.86[ASN][1000 genomes]
rs2145929	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2145930	0.88[ASN][1000 genomes]
rs2145931	0.84[ASN][1000 genomes]
rs2418321	0.84[ASN][1000 genomes]
rs56339337	0.92[ASN][1000 genomes]
rs7027093	0.81[EUR][1000 genomes]
rs7029554	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7032906	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7468800	0.89[ASN][1000 genomes]
rs7865494	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7866221	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7866379	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7873916	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117574600-117586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:117581800-117585200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:117582400-117587600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:117582600-117584800	Enhancers	NHDF-Ad	bronchial
5	chr9:117582800-117585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:117583200-117587600	Weak transcription	Placenta	Placenta
7	chr9:117583400-117585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:117583400-117585800	Weak transcription	Osteobl	bone
9	chr9:117583400-117586000	Weak transcription	NHLF	lung
10	chr9:117583600-117586400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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