Variant report

Variant	rs2145930
Chromosome Location	chr9:117602645-117602646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10114224	0.81[EUR][1000 genomes]
rs10491581	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1075074	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982413	0.81[EUR][1000 genomes]
rs10982414	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982416	0.81[EUR][1000 genomes]
rs10982417	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10982420	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10982421	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10982422	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10982423	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10982424	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10982425	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10982427	0.81[EUR][1000 genomes]
rs10982431	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982433	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982436	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982438	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982439	0.80[EUR][1000 genomes]
rs11554257	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11560576	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237626	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12237931	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12238227	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1590256	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16931895	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17292046	0.80[EUR][1000 genomes]
rs1885385	0.80[EUR][1000 genomes]
rs2093403	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2145931	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2418318	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2418321	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4262377	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56235203	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56339337	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6478111	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7468800	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7868351	0.88[ASN][1000 genomes]
rs7872350	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117602800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links