Variant report

Variant	rs10982417
Chromosome Location	chr9:117589613-117589614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10115186	0.81[EUR][1000 genomes]
rs10116032	0.81[EUR][1000 genomes]
rs10122171	0.81[EUR][1000 genomes]
rs10491581	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1075074	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10982412	0.85[CEU][hapmap]
rs10982414	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10982420	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982421	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982422	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982423	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982424	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982425	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982431	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10982433	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10982436	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10982438	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11554257	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11560576	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12237626	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12237931	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12238227	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1590256	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16931895	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16931913	0.80[EUR][1000 genomes]
rs1885385	0.81[EUR][1000 genomes]
rs2093403	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2145929	0.83[CHD][hapmap];0.92[MEX][hapmap]
rs2145930	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2145931	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2418318	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2418319	0.81[EUR][1000 genomes]
rs2418320	0.81[EUR][1000 genomes]
rs2418321	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4262377	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56235203	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56339337	0.85[AMR][1000 genomes]
rs6478111	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7027268	0.80[EUR][1000 genomes]
rs7043587	0.81[EUR][1000 genomes]
rs7468800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7868351	0.84[ASN][1000 genomes]
rs7872350	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117587600-117589800	Enhancers	Fetal Intestine Large	intestine
2	chr9:117587800-117591800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:117588200-117592000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:117588200-117592200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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