Variant report

Variant	rs1885385
Chromosome Location	chr9:117608008-117608009
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10114224	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10115186	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10116032	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10117997	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10122171	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1075074	0.81[EUR][1000 genomes]
rs10817677	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982415	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10982417	0.81[EUR][1000 genomes]
rs10982420	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982421	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982422	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982423	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982424	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982425	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982427	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982431	0.80[EUR][1000 genomes]
rs10982434	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10982436	0.80[EUR][1000 genomes]
rs10982438	0.80[EUR][1000 genomes]
rs11554257	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11560576	0.81[EUR][1000 genomes]
rs12237931	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238227	0.80[EUR][1000 genomes]
rs12337233	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12340243	0.90[EUR][1000 genomes]
rs1407306	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1419134	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1590256	0.80[EUR][1000 genomes]
rs16931913	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2093403	0.80[EUR][1000 genomes]
rs2145929	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2145930	0.80[EUR][1000 genomes]
rs2418318	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2418319	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2418320	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2418321	0.80[EUR][1000 genomes]
rs4262377	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4348576	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56136096	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56235203	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478111	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7022618	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7027093	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7027268	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7029554	0.84[EUR][1000 genomes]
rs7032906	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7043587	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7468800	0.81[EUR][1000 genomes]
rs7865494	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7866221	0.88[EUR][1000 genomes]
rs7866379	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7866387	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7868351	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7872350	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7873916	0.88[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea
2	chr9:117608000-117608800	Weak transcription	Thymus	Thymus

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