Variant report

Variant	rs1407306
Chromosome Location	chr9:117586409-117586410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10114224	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10115186	0.83[EUR][1000 genomes]
rs10116032	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10117997	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10122171	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10817677	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982414	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10982415	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982427	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10982434	0.82[EUR][1000 genomes]
rs12237626	0.83[ASN][1000 genomes]
rs12337233	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12340243	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1419134	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931913	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1885385	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2145929	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2418319	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2418320	0.83[EUR][1000 genomes]
rs4348576	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56136096	0.81[EUR][1000 genomes]
rs7022618	0.82[EUR][1000 genomes]
rs7027093	0.82[EUR][1000 genomes]
rs7027268	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7029554	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043587	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7865494	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866221	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7866379	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866387	0.83[EUR][1000 genomes]
rs7868351	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7873916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117582400-117587600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:117583200-117587600	Weak transcription	Placenta	Placenta
3	chr9:117585800-117587000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:117585800-117587200	Enhancers	Osteobl	bone
5	chr9:117585800-117587400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:117586000-117586600	Enhancers	NHLF	lung
7	chr9:117586000-117587800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:117586000-117588400	Enhancers	NHDF-Ad	bronchial
9	chr9:117586200-117587800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:117586200-117588200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:117586400-117586800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:117586400-117587000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:117586400-117587000	Enhancers	HMEC	breast
14	chr9:117586400-117588200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links