Variant report

Variant	rs7866221
Chromosome Location	chr9:117576967-117576968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10114224	0.83[EUR][1000 genomes]
rs10115186	0.84[EUR][1000 genomes]
rs10116032	0.84[EUR][1000 genomes]
rs10117997	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10122171	0.84[EUR][1000 genomes]
rs10817677	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982414	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10982415	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982427	0.83[EUR][1000 genomes]
rs10982434	0.85[EUR][1000 genomes]
rs12237626	0.83[ASN][1000 genomes]
rs12337233	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12340243	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1407306	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419134	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16931913	0.83[EUR][1000 genomes]
rs1885385	0.88[EUR][1000 genomes]
rs2145929	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2418319	0.84[EUR][1000 genomes]
rs2418320	0.84[EUR][1000 genomes]
rs4348576	0.84[EUR][1000 genomes]
rs56136096	0.82[EUR][1000 genomes]
rs7022618	0.85[EUR][1000 genomes]
rs7027093	0.83[EUR][1000 genomes]
rs7027268	0.83[EUR][1000 genomes]
rs7029554	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7032906	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7043587	0.84[EUR][1000 genomes]
rs7865494	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866379	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866387	0.84[EUR][1000 genomes]
rs7868351	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7873916	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117569800-117582600	Weak transcription	Pancreas	Pancrea
2	chr9:117573200-117577600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:117574600-117586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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