Variant report

Variant	rs7029554
Chromosome Location	chr9:117585370-117585371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10114224	0.81[EUR][1000 genomes]
rs10115186	0.82[EUR][1000 genomes]
rs10116032	0.82[EUR][1000 genomes]
rs10117997	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10122171	0.82[EUR][1000 genomes]
rs10817677	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982414	0.83[ASN][1000 genomes]
rs10982415	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10982427	0.81[EUR][1000 genomes]
rs10982434	0.81[EUR][1000 genomes]
rs12237626	0.83[ASN][1000 genomes]
rs12337233	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12340243	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1407306	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419134	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931913	0.83[EUR][1000 genomes]
rs1885385	0.84[EUR][1000 genomes]
rs2145929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2418319	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2418320	0.82[EUR][1000 genomes]
rs56136096	0.82[EUR][1000 genomes]
rs7022618	0.81[EUR][1000 genomes]
rs7027093	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7027268	0.83[EUR][1000 genomes]
rs7032906	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043587	0.82[EUR][1000 genomes]
rs7865494	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866221	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7866379	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866387	0.82[EUR][1000 genomes]
rs7868351	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7873916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117574600-117586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:117582400-117587600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:117582800-117585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:117583200-117587600	Weak transcription	Placenta	Placenta
5	chr9:117583400-117585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:117583400-117585800	Weak transcription	Osteobl	bone
7	chr9:117583400-117586000	Weak transcription	NHLF	lung
8	chr9:117583600-117586400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:117584800-117586000	Weak transcription	NHDF-Ad	bronchial
10	chr9:117585200-117585800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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