Variant report

Variant	rs7027093
Chromosome Location	chr9:117626810-117626811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117589845..117591856-chr9:117624783..117627260,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10114224	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10115186	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10116032	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10117997	0.88[EUR][1000 genomes]
rs10122171	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10491581	0.82[EUR][1000 genomes]
rs1075074	0.80[EUR][1000 genomes]
rs10817677	0.87[EUR][1000 genomes]
rs10982415	0.88[EUR][1000 genomes]
rs10982420	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982421	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982422	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982423	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982424	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982425	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10982427	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982431	0.81[EUR][1000 genomes]
rs10982433	0.80[EUR][1000 genomes]
rs10982434	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982436	0.83[EUR][1000 genomes]
rs10982438	0.83[EUR][1000 genomes]
rs11554257	0.82[EUR][1000 genomes]
rs11560576	0.80[EUR][1000 genomes]
rs12237931	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12238227	0.81[EUR][1000 genomes]
rs12337233	0.88[EUR][1000 genomes]
rs12340243	0.89[EUR][1000 genomes]
rs1407306	0.82[EUR][1000 genomes]
rs1419134	0.88[EUR][1000 genomes]
rs16931895	0.83[EUR][1000 genomes]
rs16931913	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1885385	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2093403	0.83[EUR][1000 genomes]
rs2145929	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs2145931	0.80[EUR][1000 genomes]
rs2418318	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2418319	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2418320	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418321	0.81[EUR][1000 genomes]
rs4348576	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56136096	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56235203	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6478111	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7022618	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7027268	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7029554	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7032906	0.82[EUR][1000 genomes]
rs7043587	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7865494	0.87[EUR][1000 genomes]
rs7866221	0.83[EUR][1000 genomes]
rs7866379	0.83[EUR][1000 genomes]
rs7866387	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7868351	0.81[EUR][1000 genomes]
rs7872350	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7873916	0.88[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117626400-117627600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr9:117626800-117627200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:117626800-117627200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:117626800-117627200	Enhancers	Fetal Stomach	stomach
5	chr9:117626800-117627600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:117626800-117627600	Enhancers	HSMM	muscle
7	chr9:117626800-117628000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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