Variant report

Variant	rs11554257
Chromosome Location	chr9:117605070-117605071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10114224	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10122171	0.81[ASN][1000 genomes]
rs10491581	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1075074	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10982412	0.85[CEU][hapmap]
rs10982414	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10982416	0.80[EUR][1000 genomes]
rs10982417	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982420	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982421	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982422	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982423	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982424	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982425	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982427	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982431	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10982433	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10982436	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982438	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982439	0.81[EUR][1000 genomes]
rs11560576	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12237626	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12237931	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12238227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1590256	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16931895	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16931913	0.80[EUR][1000 genomes]
rs1885385	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2093403	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2145929	0.92[MEX][hapmap]
rs2145930	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2145931	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2418318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2418321	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4262377	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4348576	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56136096	0.81[EUR][1000 genomes]
rs56235203	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56339337	0.83[AMR][1000 genomes]
rs6478111	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7027093	0.82[EUR][1000 genomes]
rs7027268	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7043587	0.92[ASN][1000 genomes]
rs7468800	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7866387	0.81[EUR][1000 genomes]
rs7872350	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Ulcerative colitis	20848476	GWAS catalog

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea

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