Variant report

Variant	rs12237931
Chromosome Location	chr9:117607618-117607619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10114224	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10115186	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10116032	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10122171	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10491581	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1075074	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10982414	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10982417	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10982420	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982421	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982422	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982423	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982424	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982425	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982427	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982431	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982433	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982434	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10982436	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10982438	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11554257	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11560576	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12237626	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12238227	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1590256	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16931895	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16931913	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1885385	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093403	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2145930	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2145931	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2418318	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2418319	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2418320	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2418321	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4262377	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4348576	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56136096	0.87[ASN][1000 genomes]
rs56235203	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478111	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7022618	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7027093	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7027268	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7043587	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7468800	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7866387	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7872350	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea
2	chr9:117606200-117607800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr9:117606800-117607800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:117607200-117608000	Enhancers	Thymus	Thymus
5	chr9:117607400-117607800	Enhancers	Primary T helper cells fromperipheralblood	blood

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