Variant report

Variant	rs16931913
Chromosome Location	chr9:117619187-117619188
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10114224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10115186	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116032	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117997	0.88[EUR][1000 genomes]
rs10122171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10491581	0.82[EUR][1000 genomes]
rs10817677	0.87[EUR][1000 genomes]
rs10982415	0.86[EUR][1000 genomes]
rs10982417	0.80[EUR][1000 genomes]
rs10982420	0.86[ASN][1000 genomes]
rs10982421	0.86[ASN][1000 genomes]
rs10982422	0.86[ASN][1000 genomes]
rs10982423	0.86[ASN][1000 genomes]
rs10982424	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982425	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10982431	0.83[EUR][1000 genomes]
rs10982433	0.82[EUR][1000 genomes]
rs10982434	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982436	0.81[EUR][1000 genomes]
rs10982438	0.81[EUR][1000 genomes]
rs11554257	0.80[EUR][1000 genomes]
rs12237931	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12337233	0.88[EUR][1000 genomes]
rs12340243	0.87[EUR][1000 genomes]
rs1407306	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1419134	0.88[EUR][1000 genomes]
rs16931895	0.81[EUR][1000 genomes]
rs1885385	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2093403	0.81[EUR][1000 genomes]
rs2145929	0.87[EUR][1000 genomes]
rs2145931	0.82[EUR][1000 genomes]
rs2418318	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2418319	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2418320	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418321	0.83[EUR][1000 genomes]
rs4262377	0.81[EUR][1000 genomes]
rs4348576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56136096	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56235203	0.86[ASN][1000 genomes]
rs6478111	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7022618	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7027093	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7029554	0.83[EUR][1000 genomes]
rs7032906	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7043587	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7468800	0.80[EUR][1000 genomes]
rs7865494	0.87[EUR][1000 genomes]
rs7866221	0.83[EUR][1000 genomes]
rs7866379	0.83[EUR][1000 genomes]
rs7866387	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872350	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7873916	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:117617400-117619400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:117617400-117619400	Enhancers	Adipose Nuclei	Adipose
4	chr9:117617400-117620000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr9:117617800-117619200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:117617800-117619800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:117617800-117620000	Enhancers	NHLF	lung
8	chr9:117618000-117619200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:117618000-117619200	Enhancers	NHEK	skin
10	chr9:117618200-117619400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:117618600-117619200	Enhancers	HMEC	breast
12	chr9:117618600-117619800	Enhancers	HSMMtube	muscle
13	chr9:117618800-117619200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:117618800-117619200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:117618800-117619200	Enhancers	Fetal Stomach	stomach
16	chr9:117618800-117619200	Flanking Active TSS	HSMM	muscle
17	chr9:117618800-117619200	Flanking Active TSS	NHDF-Ad	bronchial
18	chr9:117618800-117619200	Flanking Active TSS	Osteobl	bone
19	chr9:117618800-117619400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:117618800-117619600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:117619000-117619200	Enhancers	Rectal Smooth Muscle	rectum
22	chr9:117619000-117619200	Enhancers	NH-A	brain

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