Variant report

Variant	rs10817677
Chromosome Location	chr9:117575925-117575926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10114224	0.87[EUR][1000 genomes]
rs10115186	0.88[EUR][1000 genomes]
rs10116032	0.88[EUR][1000 genomes]
rs10117997	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122171	0.88[EUR][1000 genomes]
rs10982414	0.82[ASN][1000 genomes]
rs10982415	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982427	0.87[EUR][1000 genomes]
rs10982434	0.89[EUR][1000 genomes]
rs12237626	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12337233	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340243	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407306	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1419134	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16931913	0.87[EUR][1000 genomes]
rs1885385	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2145929	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418319	0.88[EUR][1000 genomes]
rs2418320	0.88[EUR][1000 genomes]
rs4348576	0.88[EUR][1000 genomes]
rs56136096	0.86[EUR][1000 genomes]
rs7022618	0.89[EUR][1000 genomes]
rs7027093	0.87[EUR][1000 genomes]
rs7027268	0.87[EUR][1000 genomes]
rs7029554	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032906	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7043587	0.88[EUR][1000 genomes]
rs7865494	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866221	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7866379	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866387	0.88[EUR][1000 genomes]
rs7868351	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7873916	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117568800-117576200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117569800-117582600	Weak transcription	Pancreas	Pancrea
3	chr9:117572800-117576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:117573200-117577600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:117573600-117576200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:117574600-117586400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:117575200-117576000	Enhancers	Colon Smooth Muscle	Colon
8	chr9:117575600-117576200	Enhancers	Spleen	Spleen
9	chr9:117575600-117576600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:117575800-117576000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:117575800-117576800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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