Variant report

Variant	rs10982439
Chromosome Location	chr9:117631275-117631276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10435870	0.89[EUR][1000 genomes]
rs10491581	0.83[EUR][1000 genomes]
rs1075074	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs10982412	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs10982413	0.86[EUR][1000 genomes]
rs10982416	0.89[EUR][1000 genomes]
rs10982420	0.80[EUR][1000 genomes]
rs10982421	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs10982422	0.80[EUR][1000 genomes]
rs10982423	0.80[EUR][1000 genomes]
rs10982424	0.81[EUR][1000 genomes]
rs10982425	0.81[EUR][1000 genomes]
rs10982431	0.82[EUR][1000 genomes]
rs10982433	0.81[EUR][1000 genomes]
rs10982436	0.84[EUR][1000 genomes]
rs10982438	0.84[EUR][1000 genomes]
rs10982441	0.85[EUR][1000 genomes]
rs11554257	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs11560576	0.81[EUR][1000 genomes]
rs12238227	0.82[EUR][1000 genomes]
rs16931895	0.84[EUR][1000 genomes]
rs17292046	0.88[EUR][1000 genomes]
rs1986820	0.86[EUR][1000 genomes]
rs2093403	0.84[EUR][1000 genomes]
rs2145930	0.80[EUR][1000 genomes]
rs2145931	0.81[EUR][1000 genomes]
rs2418318	0.82[EUR][1000 genomes]
rs2418321	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117627600-117632000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:117629600-117631400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr9:117630400-117632000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:117630600-117632200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:117630800-117631800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr9:117630800-117632000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:117631000-117631600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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