Variant report

Variant	rs10982441
Chromosome Location	chr9:117647599-117647600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10435870	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982412	0.82[GIH][hapmap]
rs10982413	1.00[YRI][hapmap]
rs10982439	0.85[EUR][1000 genomes]
rs11554257	0.83[MEX][hapmap]
rs1986820	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117642400-117649000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr9:117643000-117652000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:117643800-117651000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:117646800-117647600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr9:117646800-117647800	Enhancers	Hela-S3	cervix
6	chr9:117646800-117647800	Enhancers	HepG2	liver
7	chr9:117646800-117648800	Enhancers	Liver	Liver
8	chr9:117647000-117647600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:117647000-117647600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:117647000-117647600	Enhancers	HMEC	breast
11	chr9:117647000-117647800	Enhancers	NHEK	skin
12	chr9:117647200-117647600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:117647200-117647600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:117647200-117647600	Flanking Active TSS	A549	lung
15	chr9:117647400-117647600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:117647400-117647600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr9:117647400-117647600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr9:117647400-117647800	Enhancers	Stomach Mucosa	stomach
19	chr9:117647400-117650400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr9:117647400-117651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:117647400-117651800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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