Variant report

Variant	rs10435870
Chromosome Location	chr9:117655707-117655708
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10982416	0.81[EUR][1000 genomes]
rs10982439	0.89[EUR][1000 genomes]
rs10982441	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1986820	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117651200-117656000	Weak transcription	Adipose Nuclei	Adipose
2	chr9:117651200-117656000	Weak transcription	HepG2	liver
3	chr9:117651400-117655800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:117651400-117656200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:117651600-117656600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:117651600-117656600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:117651600-117656800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:117651600-117657000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:117651800-117656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:117651800-117657200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr9:117652400-117655800	Weak transcription	Liver	Liver
12	chr9:117652400-117656000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:117652400-117656400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr9:117652600-117655800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:117652600-117656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:117652600-117656000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr9:117652600-117656000	Weak transcription	HSMM	muscle
18	chr9:117652600-117656200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:117652600-117656200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:117652600-117656200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:117652600-117656200	Weak transcription	Spleen	Spleen
22	chr9:117652600-117656800	Weak transcription	Esophagus	oesophagus
23	chr9:117652600-117660000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:117652600-117662000	Weak transcription	Gastric	stomach
25	chr9:117652800-117655800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr9:117652800-117655800	Weak transcription	Osteobl	bone
27	chr9:117652800-117656000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:117652800-117656000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr9:117652800-117656000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:117652800-117656200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:117652800-117656200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr9:117652800-117656200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:117652800-117656200	Weak transcription	Thymus	Thymus
34	chr9:117652800-117656400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr9:117652800-117657000	Weak transcription	Stomach Mucosa	stomach
36	chr9:117653000-117656600	Weak transcription	Primary T cells from cord blood	blood
37	chr9:117653000-117656600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:117653000-117656600	Weak transcription	Dnd41	blood
39	chr9:117654400-117657400	Enhancers	HUVEC	blood vessel
40	chr9:117654400-117659000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr9:117654400-117661000	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr9:117654600-117656000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr9:117654800-117658600	Enhancers	Primary B cells from peripheral blood	blood
44	chr9:117655000-117655800	Enhancers	Primary B cells from cord blood	blood
45	chr9:117655000-117656800	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr9:117655200-117655800	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr9:117655200-117656600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:117655200-117657000	Enhancers	Hela-S3	cervix
49	chr9:117655200-117658000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:117655200-117660600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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