Variant report

Variant	rs1986820
Chromosome Location	chr9:117653716-117653717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117653018..117655628-chr9:117662655..117665359,2	MCF-7	breast:
2	chr9:117652267..117654785-chr9:117659593..117661164,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10435870	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10982439	0.86[EUR][1000 genomes]
rs10982441	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117647800-117655600	Weak transcription	NHDF-Ad	bronchial
2	chr9:117651200-117656000	Weak transcription	Adipose Nuclei	Adipose
3	chr9:117651200-117656000	Weak transcription	HepG2	liver
4	chr9:117651400-117655800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:117651400-117656200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:117651600-117656600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:117651600-117656600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:117651600-117656800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:117651600-117657000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:117651800-117656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:117651800-117657200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:117652400-117655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:117652400-117655400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:117652400-117655400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:117652400-117655400	Weak transcription	HMEC	breast
16	chr9:117652400-117655800	Weak transcription	Liver	Liver
17	chr9:117652400-117656000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:117652400-117656400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:117652600-117655000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:117652600-117655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:117652600-117655400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:117652600-117655600	Weak transcription	NHEK	skin
23	chr9:117652600-117655800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:117652600-117656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:117652600-117656000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:117652600-117656000	Weak transcription	HSMM	muscle
27	chr9:117652600-117656200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:117652600-117656200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr9:117652600-117656200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr9:117652600-117656200	Weak transcription	Spleen	Spleen
31	chr9:117652600-117656800	Weak transcription	Esophagus	oesophagus
32	chr9:117652600-117660000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:117652600-117662000	Weak transcription	Gastric	stomach
34	chr9:117652800-117654400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr9:117652800-117654400	Weak transcription	HUVEC	blood vessel
36	chr9:117652800-117654600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr9:117652800-117655200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr9:117652800-117655200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr9:117652800-117655200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr9:117652800-117655200	Weak transcription	Hela-S3	cervix
41	chr9:117652800-117655800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr9:117652800-117655800	Weak transcription	Osteobl	bone
43	chr9:117652800-117656000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:117652800-117656000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr9:117652800-117656000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr9:117652800-117656200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr9:117652800-117656200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr9:117652800-117656200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:117652800-117656200	Weak transcription	Thymus	Thymus
50	chr9:117652800-117656400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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