Variant report

Variant	rs4981958
Chromosome Location	chr14:32841465-32841466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32838544..32841559-chr14:32852685..32856092,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10129362	0.90[GIH][hapmap]
rs11156740	0.85[GIH][hapmap]
rs28439789	1.00[ASN][1000 genomes]
rs7145111	0.88[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8017657	0.86[CEU][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32830600-32843800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:32834400-32845200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:32836400-32843600	Enhancers	Brain Anterior Caudate	brain
4	chr14:32836400-32844000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:32836400-32844200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr14:32836600-32841600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:32836600-32841800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:32836600-32842000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:32836600-32843200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:32836600-32846800	Weak transcription	Fetal Brain Male	brain
11	chr14:32837600-32842600	Weak transcription	Fetal Heart	heart
12	chr14:32838400-32845400	Enhancers	NHEK	skin
13	chr14:32839000-32843800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:32839000-32845600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:32839200-32842400	Enhancers	HMEC	breast
16	chr14:32839400-32842200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:32839400-32842200	Enhancers	HSMM	muscle
18	chr14:32839400-32842200	Enhancers	NHLF	lung
19	chr14:32839400-32842800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:32839400-32843200	Enhancers	Brain Angular Gyrus	brain
21	chr14:32839400-32843400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:32839400-32843600	Enhancers	Hela-S3	cervix
23	chr14:32839400-32843800	Enhancers	NH-A	brain
24	chr14:32839400-32843800	Enhancers	Osteobl	bone
25	chr14:32840000-32841800	Weak transcription	HSMMtube	muscle
26	chr14:32840000-32843200	Weak transcription	Brain Germinal Matrix	brain
27	chr14:32840200-32841800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:32840200-32842800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr14:32840400-32841800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:32840600-32842200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:32840800-32843200	Enhancers	Brain Substantia Nigra	brain
32	chr14:32841000-32842000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:32841000-32842800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:32841000-32845000	Enhancers	Brain Hippocampus Middle	brain
35	chr14:32841400-32841600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:32841400-32842600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:32841400-32843800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links