Variant report

Variant	rs4984341
Chromosome Location	chr15:92573818-92573819
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17644334	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs17695293	0.86[MEX][hapmap]
rs2030208	0.93[MEX][hapmap]
rs2048946	0.85[ASN][1000 genomes]
rs28700927	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55649144	0.84[ASN][1000 genomes]
rs57220311	0.93[ASN][1000 genomes]
rs62011577	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6496888	0.95[CHB][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6496889	0.87[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67211209	0.80[EUR][1000 genomes]
rs7178228	0.82[JPT][hapmap];0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8029456	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4984341	ZNF710	cis	parietal	SCAN
rs4984341	FES	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
3	chr15:92566200-92576400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92569800-92576600	Weak transcription	Brain Anterior Caudate	brain
5	chr15:92570600-92574200	Enhancers	Adipose Nuclei	Adipose
6	chr15:92570600-92578000	Enhancers	Right Atrium	heart
7	chr15:92570800-92574000	Enhancers	Ovary	ovary
8	chr15:92571000-92574000	Weak transcription	Pancreas	Pancrea
9	chr15:92571000-92576800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
11	chr15:92571200-92575400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:92571400-92574600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:92571800-92574000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:92571800-92576600	Weak transcription	Aorta	Aorta
15	chr15:92572200-92574200	Enhancers	Right Ventricle	heart
16	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:92572400-92574000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:92572600-92574200	Enhancers	Stomach Smooth Muscle	stomach
19	chr15:92572800-92576600	Weak transcription	Fetal Brain Male	brain
20	chr15:92573000-92575000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr15:92573000-92575200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:92573000-92577200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:92573000-92578000	Enhancers	Brain Cingulate Gyrus	brain
24	chr15:92573200-92574200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:92573200-92574200	Enhancers	Lung	lung
26	chr15:92573200-92574600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:92573200-92574800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr15:92573200-92574800	Enhancers	Brain Angular Gyrus	brain
29	chr15:92573200-92575000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:92573200-92575400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr15:92573200-92577800	Enhancers	Brain Substantia Nigra	brain
32	chr15:92573400-92574600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:92573400-92574600	Weak transcription	Spleen	Spleen
34	chr15:92573600-92574800	Weak transcription	Fetal Heart	heart
35	chr15:92573600-92576800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:92573800-92574000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:92573800-92574200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:92573800-92574600	Weak transcription	Left Ventricle	heart
39	chr15:92573800-92575000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr15:92573800-92575000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr15:92573800-92576600	Weak transcription	Fetal Lung	lung
42	chr15:92573800-92579400	Enhancers	Brain Inferior Temporal Lobe	brain

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