Variant report

Variant	rs7178228
Chromosome Location	chr15:92563417-92563418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92562839..92565166-chr15:92567346..92570436,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17644334	0.90[JPT][hapmap]
rs17695287	0.81[JPT][hapmap]
rs2030208	0.86[JPT][hapmap]
rs2387398	0.81[CEU][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs28700927	0.82[ASN][1000 genomes]
rs4984341	0.82[JPT][hapmap];0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62011577	0.83[ASN][1000 genomes]
rs6496888	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6496889	1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs67211209	0.81[EUR][1000 genomes]
rs8029456	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv984212	chr15:92562075-92570410	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92554200-92566200	Enhancers	Right Atrium	heart
2	chr15:92555400-92564200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:92555600-92564000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:92555600-92565600	Weak transcription	Gastric	stomach
5	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:92555800-92564200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:92556000-92564200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:92556800-92565000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:92556800-92565200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr15:92557800-92567000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:92558000-92571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:92558600-92568600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:92559200-92564000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:92559400-92564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:92561400-92565200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:92561800-92564400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:92561800-92564600	Enhancers	Pancreas	Pancrea
19	chr15:92561800-92565000	Weak transcription	Brain Angular Gyrus	brain
20	chr15:92562000-92567800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:92562200-92563800	Enhancers	Brain Substantia Nigra	brain
22	chr15:92562200-92565000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr15:92562400-92564800	Weak transcription	Brain Anterior Caudate	brain
24	chr15:92562600-92563800	Weak transcription	Spleen	Spleen
25	chr15:92562600-92564400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:92562600-92570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:92562800-92563600	Weak transcription	Ovary	ovary
28	chr15:92562800-92564000	Enhancers	Fetal Muscle Trunk	muscle
29	chr15:92562800-92565400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:92562800-92565800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:92562800-92566400	Enhancers	Adipose Nuclei	Adipose
32	chr15:92562800-92569600	Enhancers	Fetal Heart	heart
33	chr15:92562800-92574600	Weak transcription	Esophagus	oesophagus
34	chr15:92563000-92564800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:92563200-92563800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:92563200-92564200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:92563200-92564600	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:92563200-92564800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:92563200-92565000	Weak transcription	Lung	lung
40	chr15:92563400-92563800	Weak transcription	Aorta	Aorta
41	chr15:92563400-92564000	Enhancers	NH-A	brain
42	chr15:92563400-92564200	Weak transcription	Right Ventricle	heart
43	chr15:92563400-92566000	Weak transcription	Left Ventricle	heart

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