Variant report

Variant	rs498801
Chromosome Location	chr6:69537984-69537985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69537604..69539530-chr6:69540011..69542036,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10455677	0.83[ASN][1000 genomes]
rs10485435	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11961186	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12197269	0.84[ASN][1000 genomes]
rs1932614	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1988054	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2207435	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2342761	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4706713	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs478319	0.84[ASN][1000 genomes]
rs483076	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs483833	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs491998	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs493606	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs501521	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs505031	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs513357	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs518164	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs525874	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs526156	0.92[ASN][1000 genomes]
rs526501	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs528341	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs544495	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs556592	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs56016894	0.84[ASN][1000 genomes]
rs563952	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs566190	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs569272	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72903001	0.84[ASN][1000 genomes]
rs9294812	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9346258	0.85[ASN][1000 genomes]
rs9346259	0.87[ASN][1000 genomes]
rs9363976	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9446065	0.84[YRI][hapmap]
rs9454635	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69532800-69548000	Weak transcription	Fetal Lung	lung
2	chr6:69536800-69547800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69537000-69545000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69537000-69545800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69537800-69538000	Enhancers	Brain Angular Gyrus	brain

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