Variant report

Variant	rs9346259
Chromosome Location	chr6:69589269-69589270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10455677	0.87[ASN][1000 genomes]
rs10485435	0.87[ASN][1000 genomes]
rs11961186	0.87[ASN][1000 genomes]
rs12197269	0.87[ASN][1000 genomes]
rs1988054	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2207435	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2342761	0.80[ASN][1000 genomes]
rs4706713	0.88[ASN][1000 genomes]
rs478319	0.87[ASN][1000 genomes]
rs483076	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs483833	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs491998	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs493606	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs498801	0.87[ASN][1000 genomes]
rs501521	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs505031	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs513357	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs525874	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs526156	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs526501	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs528341	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs544495	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs556592	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56016894	0.87[ASN][1000 genomes]
rs56373244	0.80[ASN][1000 genomes]
rs563952	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs566190	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs569272	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58261635	0.80[ASN][1000 genomes]
rs72903001	0.87[ASN][1000 genomes]
rs9294812	0.87[ASN][1000 genomes]
rs9346258	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9454635	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1025548	chr6:69555181-69589956	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv528106	chr6:69581991-69610281	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69586600-69591200	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69587400-69589800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:69587600-69589800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69589000-69590000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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