Variant report
| Variant | rs56373244 |
|---|---|
| Chromosome Location | chr6:69611234-69611235 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:69604221..69606284-chr6:69610913..69612679,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10455677 | 0.92[ASN][1000 genomes] |
| rs10485435 | 0.93[ASN][1000 genomes] |
| rs11961186 | 0.93[ASN][1000 genomes] |
| rs12197269 | 0.93[ASN][1000 genomes] |
| rs1988054 | 0.85[ASN][1000 genomes] |
| rs2207435 | 0.85[ASN][1000 genomes] |
| rs2342761 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4706713 | 0.92[ASN][1000 genomes] |
| rs478319 | 0.90[ASN][1000 genomes] |
| rs483076 | 0.82[ASN][1000 genomes] |
| rs483833 | 0.85[ASN][1000 genomes] |
| rs491998 | 0.82[ASN][1000 genomes] |
| rs493606 | 0.84[ASN][1000 genomes] |
| rs501521 | 0.85[ASN][1000 genomes] |
| rs505031 | 0.85[ASN][1000 genomes] |
| rs513357 | 0.85[ASN][1000 genomes] |
| rs525874 | 0.85[ASN][1000 genomes] |
| rs526156 | 0.85[ASN][1000 genomes] |
| rs526501 | 0.85[ASN][1000 genomes] |
| rs528341 | 0.85[ASN][1000 genomes] |
| rs544495 | 0.82[ASN][1000 genomes] |
| rs556592 | 0.85[ASN][1000 genomes] |
| rs56016894 | 0.93[ASN][1000 genomes] |
| rs563952 | 0.85[ASN][1000 genomes] |
| rs566190 | 0.84[ASN][1000 genomes] |
| rs569272 | 0.82[ASN][1000 genomes] |
| rs58261635 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72903001 | 0.93[ASN][1000 genomes] |
| rs9294812 | 0.92[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9346259 | 0.80[ASN][1000 genomes] |
| rs9454635 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470831 | chr6:69581991-69654650 | Weak transcription Enhancers ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv886136 | chr6:69598297-69654650 | Weak transcription Strong transcription ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:69602800-69621000 | Weak transcription | Fetal Lung | lung |
| 2 | chr6:69610400-69611400 | Enhancers | K562 | blood |
