Variant report

Variant	rs499383
Chromosome Location	chr4:127370341-127370342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs494033	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs519699	0.96[ASN][1000 genomes]
rs57947294	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs60958358	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61587701	0.92[AFR][1000 genomes]
rs654576	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv964313	chr4:127366199-127370561	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood
2	chr4:127367400-127372200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:127368200-127370800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:127369600-127372200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:127370000-127373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:127370200-127372000	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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