Variant report

Variant	rs654576
Chromosome Location	chr4:127369690-127369691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs494033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs499383	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs519699	0.86[CEU][hapmap]
rs57947294	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60958358	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61587701	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs625968	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv964313	chr4:127366199-127370561	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood
2	chr4:127367400-127372200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:127368200-127370800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:127368400-127369800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:127368600-127370000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:127368800-127369800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:127369000-127369800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:127369000-127370000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:127369400-127369800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:127369400-127369800	Flanking Active TSS	NHDF-Ad	bronchial
11	chr4:127369400-127370000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:127369600-127372200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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