Variant report

Variant	rs5015728
Chromosome Location	chr1:219961053-219961054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10495140	0.85[JPT][hapmap]
rs17006694	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36172598	0.85[ASN][1000 genomes]
rs6662809	0.85[ASN][1000 genomes]
rs7535892	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219958600-219961600	Weak transcription	NH-A	brain
2	chr1:219958600-219964000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:219958800-219965200	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:219959000-219961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:219959000-219963800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:219959000-219965200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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