Variant report

Variant	rs6662809
Chromosome Location	chr1:219962183-219962184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:219961059..219962710-chr1:219963593..219966075,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10495140	0.85[JPT][hapmap]
rs12022944	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12027738	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12028121	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12028892	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12044048	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12048116	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12048880	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12567261	0.81[EUR][1000 genomes]
rs12568237	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12568466	0.81[EUR][1000 genomes]
rs1418748	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1418749	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1418750	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17006614	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1890295	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2378320	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2378321	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2378322	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2378323	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36130413	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs36172598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4264002	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4440861	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs5015728	0.85[ASN][1000 genomes]
rs6678855	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6691756	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6696853	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6697094	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6697171	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6698185	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7418846	1.00[AFR][1000 genomes]
rs7523475	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7526289	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7527063	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7535892	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219958600-219964000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:219958800-219965200	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:219959000-219963800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:219959000-219965200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:219961200-219964600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:219962000-219963200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:219962000-219963600	Weak transcription	NH-A	brain

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