Variant report

Variant	rs7526289
Chromosome Location	chr1:219969896-219969897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:219963322..219965517-chr1:219968353..219970173,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10495140	1.00[MKK][hapmap]
rs12022944	0.85[EUR][1000 genomes]
rs12027738	0.86[EUR][1000 genomes]
rs12028121	0.85[EUR][1000 genomes]
rs12028892	0.85[EUR][1000 genomes]
rs12044048	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12048116	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12048880	0.86[EUR][1000 genomes]
rs12567261	0.85[EUR][1000 genomes]
rs12568237	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12568466	0.85[EUR][1000 genomes]
rs1418748	0.86[EUR][1000 genomes]
rs1418749	0.86[EUR][1000 genomes]
rs1418750	0.86[EUR][1000 genomes]
rs1694594	0.89[MKK][hapmap]
rs17006614	0.85[EUR][1000 genomes]
rs1776046	0.89[MKK][hapmap]
rs1890295	0.91[CEU][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2275707	0.85[MKK][hapmap]
rs2378320	0.86[EUR][1000 genomes]
rs2378321	0.86[EUR][1000 genomes]
rs2378322	0.86[EUR][1000 genomes]
rs2378323	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs36130413	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36172598	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4264002	0.86[EUR][1000 genomes]
rs4440861	0.86[EUR][1000 genomes]
rs6662809	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6678855	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6691756	0.83[EUR][1000 genomes]
rs6696853	0.86[EUR][1000 genomes]
rs6697094	0.86[EUR][1000 genomes]
rs6697171	0.86[EUR][1000 genomes]
rs6698185	0.86[EUR][1000 genomes]
rs7418846	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7523475	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv947518	chr1:219967913-219974435	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219964600-219971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:219964800-219970600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:219965000-219972200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:219965800-219971400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:219966200-219971600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:219966400-219980200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:219966800-219971200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:219966800-219971400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:219967400-219970400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:219968000-219970200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:219968000-219970400	Weak transcription	NHDF-Ad	bronchial

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