Variant report

Variant	rs7527063
Chromosome Location	chr1:219979476-219979477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10495138	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10495140	0.85[JPT][hapmap]
rs12080869	0.80[ASN][1000 genomes]
rs12082170	0.80[ASN][1000 genomes]
rs12091613	0.89[AFR][1000 genomes]
rs12095559	0.80[ASN][1000 genomes]
rs17006687	0.85[ASN][1000 genomes]
rs17006690	0.87[AFR][1000 genomes]
rs17006694	0.81[ASN][1000 genomes]
rs17006696	0.87[AFR][1000 genomes]
rs17551179	0.83[ASN][1000 genomes]
rs36172598	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55664953	0.85[ASN][1000 genomes]
rs56088885	0.85[ASN][1000 genomes]
rs6662809	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6672682	0.85[ASN][1000 genomes]
rs72738754	0.85[ASN][1000 genomes]
rs7418846	0.91[EUR][1000 genomes]
rs7514630	0.87[AFR][1000 genomes]
rs7529610	0.94[AFR][1000 genomes]
rs7535892	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219966400-219980200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:219972200-219985600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:219979200-219980600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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