Variant report
| Variant | rs12080869 |
|---|---|
| Chromosome Location | chr1:219993252-219993253 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11118426 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11118427 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11118428 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11118429 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11118430 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11118431 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12082170 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12089488 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12095559 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17006687 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17551179 | 0.90[ASN][1000 genomes] |
| rs55664953 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs55740390 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56088885 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6672682 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6686864 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6687322 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72738754 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72738777 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72738783 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7527063 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006393 | chr1:219925261-220126458 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1067840 | chr1:219990803-220091941 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:219986000-219997200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
