Variant report

Variant	rs17551179
Chromosome Location	chr1:219969217-219969218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:219963322..219965517-chr1:219968353..219970173,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11118426	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11118427	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11118428	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11118429	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11118430	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11118431	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11803657	0.91[AFR][1000 genomes]
rs11805110	0.91[AFR][1000 genomes]
rs11805132	0.82[AFR][1000 genomes]
rs11808330	0.91[AFR][1000 genomes]
rs12080869	0.90[ASN][1000 genomes]
rs12082170	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12089488	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12095559	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13375416	0.96[AFR][1000 genomes]
rs17006687	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2378324	0.96[AFR][1000 genomes]
rs55664953	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55712001	0.90[AFR][1000 genomes]
rs55740390	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55753922	0.84[AFR][1000 genomes]
rs55800251	0.91[AFR][1000 genomes]
rs55920559	0.91[AFR][1000 genomes]
rs55931064	0.81[AFR][1000 genomes]
rs55981027	0.92[AFR][1000 genomes]
rs56073293	0.91[AFR][1000 genomes]
rs56088885	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56213832	0.84[AFR][1000 genomes]
rs60659404	0.96[AFR][1000 genomes]
rs6672682	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6676773	0.96[AFR][1000 genomes]
rs6686864	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6687322	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72738745	0.96[AFR][1000 genomes]
rs72738748	0.96[AFR][1000 genomes]
rs72738750	0.91[AFR][1000 genomes]
rs72738751	0.91[AFR][1000 genomes]
rs72738753	0.84[AFR][1000 genomes]
rs72738754	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72738777	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72738783	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7527063	0.83[ASN][1000 genomes]
rs7533484	0.92[AFR][1000 genomes]
rs7535834	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv947518	chr1:219967913-219974435	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219964600-219971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:219964800-219970600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:219965000-219972200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:219965800-219971400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:219966200-219971600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:219966400-219980200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:219966800-219971200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:219966800-219971400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:219967400-219970400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:219968000-219970200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:219968000-219970400	Weak transcription	NHDF-Ad	bronchial
12	chr1:219968600-219969600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links