Variant report

Variant	rs5016916
Chromosome Location	chr9:16751917-16751918
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10733319	0.82[ASN][1000 genomes]
rs10738455	0.82[ASN][1000 genomes]
rs10738456	0.82[ASN][1000 genomes]
rs10738458	0.82[ASN][1000 genomes]
rs10756802	0.82[ASN][1000 genomes]
rs10756803	0.82[ASN][1000 genomes]
rs10756804	0.82[ASN][1000 genomes]
rs10756805	0.82[ASN][1000 genomes]
rs10756806	0.82[ASN][1000 genomes]
rs10810605	0.82[ASN][1000 genomes]
rs10962563	0.82[ASN][1000 genomes]
rs10962564	0.82[ASN][1000 genomes]
rs10962565	0.82[ASN][1000 genomes]
rs1330294	0.82[ASN][1000 genomes]
rs1330296	0.82[ASN][1000 genomes]
rs1330298	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1928849	0.82[ASN][1000 genomes]
rs1980935	0.82[ASN][1000 genomes]
rs1980936	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2039188	0.82[ASN][1000 genomes]
rs28529611	0.82[ASN][1000 genomes]
rs4961750	0.82[ASN][1000 genomes]
rs4961751	0.82[ASN][1000 genomes]
rs4961753	0.82[ASN][1000 genomes]
rs5016911	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5016915	0.98[ASN][1000 genomes]
rs5016917	0.82[ASN][1000 genomes]
rs6475074	0.82[ASN][1000 genomes]
rs6475075	0.82[ASN][1000 genomes]
rs6475076	0.82[ASN][1000 genomes]
rs6475077	0.82[ASN][1000 genomes]
rs6475078	0.82[ASN][1000 genomes]
rs7035033	0.86[ASN][1000 genomes]
rs7035178	0.82[ASN][1000 genomes]
rs7038545	0.82[ASN][1000 genomes]
rs7043797	0.86[ASN][1000 genomes]
rs7470506	0.82[ASN][1000 genomes]
rs7851438	0.82[ASN][1000 genomes]
rs7853573	0.82[ASN][1000 genomes]
rs7853718	0.82[ASN][1000 genomes]
rs7853897	0.82[ASN][1000 genomes]
rs7867602	0.82[ASN][1000 genomes]
rs9987413	0.82[ASN][1000 genomes]
rs9987475	0.82[ASN][1000 genomes]
rs9987476	0.82[ASN][1000 genomes]
rs9987698	0.82[ASN][1000 genomes]
rs9987701	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16745400-16752400	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:16745400-16758000	Weak transcription	Ovary	ovary
3	chr9:16745400-16774800	Weak transcription	Osteobl	bone
4	chr9:16745600-16752200	Weak transcription	NHDF-Ad	bronchial
5	chr9:16745600-16766200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:16748000-16752200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:16748200-16752200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:16749600-16755000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:16750000-16755200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:16750000-16756000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:16750000-16756600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:16750600-16755200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:16750800-16752400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:16751000-16752800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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