Variant report
Variant | rs5016911 |
---|---|
Chromosome Location | chr9:16751755-16751756 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10733318 | 0.95[ASN][1000 genomes] |
rs10733319 | 1.00[ASN][1000 genomes] |
rs10738455 | 1.00[ASN][1000 genomes] |
rs10738456 | 1.00[ASN][1000 genomes] |
rs10738458 | 1.00[ASN][1000 genomes] |
rs10738459 | 0.84[ASN][1000 genomes] |
rs10756802 | 1.00[ASN][1000 genomes] |
rs10756803 | 1.00[ASN][1000 genomes] |
rs10756804 | 1.00[ASN][1000 genomes] |
rs10756805 | 1.00[ASN][1000 genomes] |
rs10756806 | 1.00[ASN][1000 genomes] |
rs10756808 | 0.84[ASN][1000 genomes] |
rs10756809 | 0.84[ASN][1000 genomes] |
rs10810605 | 1.00[ASN][1000 genomes] |
rs10810608 | 0.88[ASN][1000 genomes] |
rs10810609 | 0.90[ASN][1000 genomes] |
rs10810612 | 0.84[ASN][1000 genomes] |
rs10962563 | 1.00[ASN][1000 genomes] |
rs10962564 | 1.00[ASN][1000 genomes] |
rs10962565 | 1.00[ASN][1000 genomes] |
rs10962566 | 0.95[ASN][1000 genomes] |
rs12002953 | 0.90[ASN][1000 genomes] |
rs12004872 | 0.88[ASN][1000 genomes] |
rs13285058 | 0.95[ASN][1000 genomes] |
rs13299069 | 0.84[ASN][1000 genomes] |
rs13300274 | 0.84[ASN][1000 genomes] |
rs1330294 | 1.00[ASN][1000 genomes] |
rs1330296 | 1.00[ASN][1000 genomes] |
rs1330297 | 0.95[ASN][1000 genomes] |
rs1330298 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16934964 | 0.86[ASN][1000 genomes] |
rs1888205 | 0.81[ASN][1000 genomes] |
rs1928849 | 1.00[ASN][1000 genomes] |
rs1970284 | 0.91[ASN][1000 genomes] |
rs1970285 | 0.91[ASN][1000 genomes] |
rs1980935 | 1.00[ASN][1000 genomes] |
rs1980936 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1980937 | 0.95[ASN][1000 genomes] |
rs2039187 | 0.95[ASN][1000 genomes] |
rs2039188 | 1.00[ASN][1000 genomes] |
rs2094781 | 0.84[ASN][1000 genomes] |
rs2225326 | 0.91[ASN][1000 genomes] |
rs28529611 | 1.00[ASN][1000 genomes] |
rs4961739 | 0.81[ASN][1000 genomes] |
rs4961740 | 0.81[ASN][1000 genomes] |
rs4961742 | 0.81[ASN][1000 genomes] |
rs4961744 | 0.81[ASN][1000 genomes] |
rs4961750 | 1.00[ASN][1000 genomes] |
rs4961751 | 1.00[ASN][1000 genomes] |
rs4961752 | 0.87[ASN][1000 genomes] |
rs4961753 | 1.00[ASN][1000 genomes] |
rs5015536 | 0.84[ASN][1000 genomes] |
rs5015537 | 0.84[ASN][1000 genomes] |
rs5015539 | 0.84[ASN][1000 genomes] |
rs5015540 | 0.84[ASN][1000 genomes] |
rs5016915 | 0.80[ASN][1000 genomes] |
rs5016916 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs5016917 | 1.00[ASN][1000 genomes] |
rs6475073 | 0.91[ASN][1000 genomes] |
rs6475074 | 1.00[ASN][1000 genomes] |
rs6475075 | 1.00[ASN][1000 genomes] |
rs6475076 | 1.00[ASN][1000 genomes] |
rs6475077 | 1.00[ASN][1000 genomes] |
rs6475078 | 1.00[ASN][1000 genomes] |
rs7021735 | 0.95[ASN][1000 genomes] |
rs7028403 | 0.88[ASN][1000 genomes] |
rs7028827 | 0.90[ASN][1000 genomes] |
rs7034961 | 0.88[ASN][1000 genomes] |
rs7035033 | 0.95[ASN][1000 genomes] |
rs7035178 | 1.00[ASN][1000 genomes] |
rs7035732 | 0.91[ASN][1000 genomes] |
rs7035869 | 0.81[ASN][1000 genomes] |
rs7038545 | 1.00[ASN][1000 genomes] |
rs7043797 | 0.95[ASN][1000 genomes] |
rs7047213 | 0.93[ASN][1000 genomes] |
rs7470506 | 1.00[ASN][1000 genomes] |
rs7851438 | 1.00[ASN][1000 genomes] |
rs7853541 | 0.95[ASN][1000 genomes] |
rs7853573 | 1.00[ASN][1000 genomes] |
rs7853718 | 1.00[ASN][1000 genomes] |
rs7853764 | 0.95[ASN][1000 genomes] |
rs7853897 | 1.00[ASN][1000 genomes] |
rs7857685 | 0.95[ASN][1000 genomes] |
rs7857721 | 0.95[ASN][1000 genomes] |
rs7857929 | 0.91[ASN][1000 genomes] |
rs7858709 | 0.91[ASN][1000 genomes] |
rs7858712 | 0.91[ASN][1000 genomes] |
rs7858914 | 0.91[ASN][1000 genomes] |
rs7866999 | 0.95[ASN][1000 genomes] |
rs7867602 | 1.00[ASN][1000 genomes] |
rs7868192 | 0.84[ASN][1000 genomes] |
rs7868606 | 0.84[ASN][1000 genomes] |
rs7868731 | 0.84[ASN][1000 genomes] |
rs7868797 | 0.84[ASN][1000 genomes] |
rs7869115 | 0.80[ASN][1000 genomes] |
rs9987413 | 1.00[ASN][1000 genomes] |
rs9987475 | 1.00[ASN][1000 genomes] |
rs9987476 | 1.00[ASN][1000 genomes] |
rs9987698 | 1.00[ASN][1000 genomes] |
rs9987701 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530933 | chr9:16251206-16830845 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv530934 | chr9:16281246-16779432 | Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | nsv1032856 | chr9:16465330-16773471 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
4 | nsv540073 | chr9:16465330-16773471 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
5 | nsv1024799 | chr9:16631890-17431827 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
6 | esv2758627 | chr9:16641966-16809203 | Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
7 | esv2759673 | chr9:16641966-16809203 | Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
8 | nsv892649 | chr9:16677221-16761597 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
9 | nsv892650 | chr9:16696187-16950860 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:16745400-16752400 | Weak transcription | Colon Smooth Muscle | Colon |
2 | chr9:16745400-16758000 | Weak transcription | Ovary | ovary |
3 | chr9:16745400-16774800 | Weak transcription | Osteobl | bone |
4 | chr9:16745600-16752200 | Weak transcription | NHDF-Ad | bronchial |
5 | chr9:16745600-16766200 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
6 | chr9:16748000-16752200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
7 | chr9:16748200-16752200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
8 | chr9:16749600-16755000 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
9 | chr9:16750000-16755200 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
10 | chr9:16750000-16756000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
11 | chr9:16750000-16756600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
12 | chr9:16750600-16755200 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
13 | chr9:16750800-16752400 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
14 | chr9:16751000-16752800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |