Variant report

Variant	rs16934964
Chromosome Location	chr9:16743553-16743554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10733318	0.82[ASN][1000 genomes]
rs10733319	0.86[ASN][1000 genomes]
rs10738452	0.85[CHB][hapmap]
rs10738455	0.86[ASN][1000 genomes]
rs10738456	0.86[ASN][1000 genomes]
rs10738458	0.86[ASN][1000 genomes]
rs10738459	1.00[CHB][hapmap]
rs10756791	0.85[CHB][hapmap]
rs10756802	0.86[ASN][1000 genomes]
rs10756803	0.86[ASN][1000 genomes]
rs10756804	0.86[ASN][1000 genomes]
rs10756805	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10756806	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10756808	1.00[CHB][hapmap]
rs10756809	1.00[JPT][hapmap]
rs10810597	0.85[CHB][hapmap]
rs10810605	0.86[ASN][1000 genomes]
rs10810612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10962563	0.86[ASN][1000 genomes]
rs10962564	0.86[ASN][1000 genomes]
rs10962565	0.86[ASN][1000 genomes]
rs10962566	0.82[ASN][1000 genomes]
rs11999316	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12001291	1.00[AMR][1000 genomes]
rs12002953	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12004872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13285058	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1330294	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1330296	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1330297	0.82[ASN][1000 genomes]
rs1330298	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1330302	0.85[CHB][hapmap]
rs1411429	0.85[CHB][hapmap]
rs1411430	0.85[CHB][hapmap]
rs1537004	0.85[CHB][hapmap]
rs1888205	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs1928849	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1970284	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1970285	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1980935	0.86[ASN][1000 genomes]
rs1980936	0.86[ASN][1000 genomes]
rs1980937	0.82[ASN][1000 genomes]
rs2039187	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2039188	0.86[ASN][1000 genomes]
rs2094781	1.00[CHB][hapmap]
rs2150090	0.85[CHB][hapmap]
rs2183408	0.85[CHB][hapmap]
rs2275255	0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs2840290	0.84[CHB][hapmap]
rs28529611	0.86[ASN][1000 genomes]
rs3850446	0.85[CHB][hapmap]
rs3850447	0.85[CHB][hapmap]
rs3904154	0.85[CHB][hapmap]
rs4405008	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4961739	0.81[AFR][1000 genomes]
rs4961742	0.81[AFR][1000 genomes]
rs4961744	0.81[AFR][1000 genomes]
rs4961750	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4961751	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4961753	0.86[ASN][1000 genomes]
rs5015536	1.00[CHB][hapmap]
rs5015537	1.00[CHB][hapmap]
rs5015539	1.00[CHB][hapmap]
rs5015540	1.00[CHB][hapmap]
rs5016911	0.86[ASN][1000 genomes]
rs5016917	0.86[ASN][1000 genomes]
rs6475074	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs6475075	0.86[ASN][1000 genomes]
rs6475076	0.86[ASN][1000 genomes]
rs6475077	0.86[ASN][1000 genomes]
rs6475078	0.86[ASN][1000 genomes]
rs7021735	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7029771	1.00[EUR][1000 genomes]
rs7034961	1.00[CHB][hapmap]
rs7035033	0.82[ASN][1000 genomes]
rs7035178	0.86[ASN][1000 genomes]
rs7035732	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7035869	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7038545	0.86[ASN][1000 genomes]
rs7043797	0.82[ASN][1000 genomes]
rs7470506	0.86[ASN][1000 genomes]
rs7851438	0.86[ASN][1000 genomes]
rs7853424	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7853541	0.82[ASN][1000 genomes]
rs7853573	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7853718	0.86[ASN][1000 genomes]
rs7853764	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7853897	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7857685	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7857721	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs7857929	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7858709	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7858712	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7858914	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7866999	0.82[ASN][1000 genomes]
rs7867602	0.86[ASN][1000 genomes]
rs7868797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7869097	1.00[EUR][1000 genomes]
rs9987413	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9987475	0.86[ASN][1000 genomes]
rs9987476	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9987698	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9987701	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16728200-16744600	Weak transcription	Fetal Intestine Large	intestine
2	chr9:16728400-16744200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:16729400-16744400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:16729600-16744200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:16730000-16744600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:16730200-16748200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:16730600-16744400	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:16731200-16744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:16733400-16743800	Weak transcription	HSMM	muscle
10	chr9:16733800-16749200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:16734800-16745000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:16735000-16743600	Weak transcription	NHLF	lung
13	chr9:16735000-16749200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:16735200-16744400	Weak transcription	Fetal Lung	lung
15	chr9:16736200-16744600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:16738600-16745200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:16738600-16749200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:16739200-16745200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:16739200-16745400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:16740200-16744400	Weak transcription	Ovary	ovary
21	chr9:16742600-16743600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:16742600-16746000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:16743200-16743800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:16743200-16743800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:16743200-16745600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:16743400-16743600	Enhancers	Osteobl	bone
27	chr9:16743400-16743800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:16743400-16744000	Enhancers	Fetal Stomach	stomach
29	chr9:16743400-16745600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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