Variant report

Variant	rs10738452
Chromosome Location	chr9:16717273-16717274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10283606	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10733317	0.87[ASN][1000 genomes]
rs10738450	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10738451	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10738453	0.86[ASN][1000 genomes]
rs10738459	0.85[CHB][hapmap]
rs10756791	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10756805	0.85[CHB][hapmap]
rs10756806	0.85[CHB][hapmap]
rs10756808	0.85[CHB][hapmap]
rs10810597	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810612	0.85[CHB][hapmap]
rs10962557	0.81[EUR][1000 genomes]
rs13285058	0.85[CHB][hapmap]
rs1330294	0.85[CHB][hapmap]
rs1330296	0.85[CHB][hapmap]
rs1330298	0.85[CHB][hapmap]
rs1330302	0.85[CHB][hapmap]
rs1361074	1.00[YRI][hapmap]
rs1411429	0.85[CHB][hapmap]
rs1411430	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1537004	0.85[CHB][hapmap]
rs1544103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16934964	0.85[CHB][hapmap]
rs1888205	0.85[CHB][hapmap]
rs1928849	0.85[CHB][hapmap]
rs1970284	0.85[CHB][hapmap]
rs1970285	0.85[CHB][hapmap]
rs1980936	0.83[EUR][1000 genomes]
rs2094781	0.85[CHB][hapmap]
rs2150090	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2183408	0.85[CHB][hapmap]
rs2210104	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2275255	0.85[CHB][hapmap]
rs2840290	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850446	0.85[CHB][hapmap]
rs3850447	0.85[CHB][hapmap]
rs3904154	0.85[CHB][hapmap]
rs4626704	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4961750	0.85[CHB][hapmap]
rs4961751	0.85[CHB][hapmap]
rs5015536	0.85[CHB][hapmap]
rs5015537	0.85[CHB][hapmap]
rs5015539	0.84[CHB][hapmap]
rs5015540	0.85[CHB][hapmap]
rs6475074	0.85[CHB][hapmap]
rs7022131	0.84[AFR][1000 genomes]
rs7029546	0.86[ASN][1000 genomes]
rs7029771	1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7034961	0.85[CHB][hapmap]
rs7042146	0.81[ASN][1000 genomes]
rs73419968	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7853573	0.85[CHB][hapmap]
rs7853764	0.85[CHB][hapmap]
rs7853897	0.85[CHB][hapmap]
rs7857721	0.82[CHB][hapmap]
rs7857929	0.85[CHB][hapmap]
rs7866023	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs7868797	0.85[CHB][hapmap]
rs7869097	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9987413	0.85[CHB][hapmap]
rs9987476	0.85[CHB][hapmap]
rs9987698	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16708000-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:16709000-16726000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:16709200-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:16709400-16718600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:16709400-16719000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:16709600-16725800	Weak transcription	Fetal Stomach	stomach
7	chr9:16710400-16719000	Weak transcription	NH-A	brain
8	chr9:16711200-16718000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:16711400-16718000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:16711400-16718000	Weak transcription	Fetal Lung	lung
11	chr9:16711400-16726600	Weak transcription	Psoas Muscle	Psoas
12	chr9:16711800-16720800	Weak transcription	HSMM	muscle
13	chr9:16713200-16718600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:16713200-16725800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:16713200-16726600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:16713400-16718000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr9:16714200-16718000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:16714200-16718800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:16714200-16721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:16714200-16722000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:16714200-16722000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:16714400-16722200	Enhancers	NHDF-Ad	bronchial
23	chr9:16714600-16717400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:16715400-16720400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:16715600-16718800	Weak transcription	Adipose Nuclei	Adipose
26	chr9:16715800-16717600	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:16715800-16718000	Weak transcription	Ovary	ovary
28	chr9:16715800-16719000	Weak transcription	HSMMtube	muscle
29	chr9:16715800-16719200	Weak transcription	Right Atrium	heart
30	chr9:16715800-16720600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr9:16715800-16720600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr9:16716200-16717400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:16716200-16718200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:16716400-16717400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:16716400-16718000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:16716600-16717600	Weak transcription	Osteobl	bone
37	chr9:16716600-16720400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr9:16716600-16721800	Weak transcription	NHLF	lung
39	chr9:16717000-16718400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:16717000-16718400	Weak transcription	A549	lung
41	chr9:16717000-16719200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr9:16717000-16720400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr9:16717000-16720600	Enhancers	HUES6 Cell Line	embryonic stem cell

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