Variant report

Variant	rs7029546
Chromosome Location	chr9:16713078-16713079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10283606	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10733317	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10733318	0.82[EUR][1000 genomes]
rs10738450	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10738451	0.82[ASN][1000 genomes]
rs10738452	0.86[ASN][1000 genomes]
rs10738453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10738454	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10738455	0.82[EUR][1000 genomes]
rs10738456	0.82[EUR][1000 genomes]
rs10738458	0.82[EUR][1000 genomes]
rs10738459	0.81[AMR][1000 genomes]
rs10756795	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10756802	0.82[EUR][1000 genomes]
rs10756803	0.82[EUR][1000 genomes]
rs10756804	0.82[EUR][1000 genomes]
rs10756805	0.82[EUR][1000 genomes]
rs10756806	0.82[EUR][1000 genomes]
rs10810605	0.82[EUR][1000 genomes]
rs10810612	0.81[AMR][1000 genomes]
rs10962563	0.82[EUR][1000 genomes]
rs10962564	0.82[EUR][1000 genomes]
rs10962565	0.82[EUR][1000 genomes]
rs10962566	0.82[EUR][1000 genomes]
rs13285058	0.82[EUR][1000 genomes]
rs1330294	0.82[EUR][1000 genomes]
rs1330302	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1360285	0.83[EUR][1000 genomes]
rs1361074	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1361076	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1411429	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1537004	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1544103	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1854694	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1888205	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1970284	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1970285	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1980935	0.80[EUR][1000 genomes]
rs1980937	0.82[EUR][1000 genomes]
rs2039187	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2094781	0.81[AMR][1000 genomes]
rs2183408	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2210104	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2225326	0.80[EUR][1000 genomes]
rs2225327	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28529611	0.82[EUR][1000 genomes]
rs3850446	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3850447	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3904154	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4405008	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4626704	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4961739	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4961740	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4961742	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4961744	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4961750	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4961751	0.82[EUR][1000 genomes]
rs4961753	0.82[EUR][1000 genomes]
rs5015536	0.81[AMR][1000 genomes]
rs5015537	0.81[AMR][1000 genomes]
rs5015539	0.81[AMR][1000 genomes]
rs5015540	0.86[AMR][1000 genomes]
rs6475069	0.90[EUR][1000 genomes]
rs6475073	0.80[EUR][1000 genomes]
rs7021735	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7022131	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7034961	0.82[EUR][1000 genomes]
rs7035033	0.82[EUR][1000 genomes]
rs7035178	0.82[EUR][1000 genomes]
rs7035732	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7040406	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7042146	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7047213	0.82[EUR][1000 genomes]
rs7853424	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7853541	0.80[EUR][1000 genomes]
rs7853573	0.82[EUR][1000 genomes]
rs7853718	0.82[EUR][1000 genomes]
rs7853897	0.82[EUR][1000 genomes]
rs7855267	0.81[AMR][1000 genomes]
rs7857685	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7857721	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7857929	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7858709	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7858712	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7858914	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7868192	0.81[AMR][1000 genomes]
rs7868606	0.81[AMR][1000 genomes]
rs7868731	0.81[AMR][1000 genomes]
rs7868797	0.81[AMR][1000 genomes]
rs7869115	0.82[EUR][1000 genomes]
rs944208	0.81[AMR][1000 genomes]
rs9987413	0.82[EUR][1000 genomes]
rs9987475	0.82[EUR][1000 genomes]
rs9987476	0.82[EUR][1000 genomes]
rs9987701	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16705600-16713800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:16707800-16713200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:16708000-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:16708200-16713200	Enhancers	A549	lung
5	chr9:16708200-16716200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:16709000-16726000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:16709200-16713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:16709200-16713800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:16709200-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:16709400-16714200	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:16709400-16714400	Weak transcription	Osteobl	bone
12	chr9:16709400-16718600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:16709400-16719000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:16709600-16714600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:16709600-16714600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:16709600-16714800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr9:16709600-16725800	Weak transcription	Fetal Stomach	stomach
18	chr9:16710400-16719000	Weak transcription	NH-A	brain
19	chr9:16711000-16714200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:16711200-16713600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr9:16711200-16713800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:16711200-16714200	Weak transcription	NHLF	lung
23	chr9:16711200-16718000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:16711400-16713400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr9:16711400-16714000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr9:16711400-16714400	Weak transcription	NHDF-Ad	bronchial
27	chr9:16711400-16715000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr9:16711400-16718000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:16711400-16718000	Weak transcription	Fetal Lung	lung
30	chr9:16711400-16726600	Weak transcription	Psoas Muscle	Psoas
31	chr9:16711600-16714200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr9:16711800-16720800	Weak transcription	HSMM	muscle
33	chr9:16712600-16713200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:16712600-16714200	Enhancers	H9 Cell Line	embryonic stem cell
35	chr9:16712600-16714200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:16712600-16716200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:16712800-16713200	Enhancers	Rectal Smooth Muscle	rectum
38	chr9:16712800-16713400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr9:16712800-16713400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr9:16712800-16713400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr9:16712800-16714200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:16712800-16714400	Enhancers	Ovary	ovary
43	chr9:16713000-16717000	Weak transcription	Fetal Kidney	kidney

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