Variant report

Variant	rs1360285
Chromosome Location	chr9:16727698-16727699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:52445126..52445753-chr9:16726910..16727745,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000123358	Chromatin interaction

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10283606	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10732336	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733317	1.00[CEU][hapmap]
rs10733318	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10733319	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10738450	1.00[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs10738453	1.00[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs10738454	0.84[EUR][1000 genomes]
rs10738455	0.84[EUR][1000 genomes]
rs10738456	0.84[EUR][1000 genomes]
rs10738458	0.84[EUR][1000 genomes]
rs10738459	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs10756795	0.84[EUR][1000 genomes]
rs10756802	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10756803	0.84[EUR][1000 genomes]
rs10756804	0.84[EUR][1000 genomes]
rs10756805	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10756806	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs10756808	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10756809	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10810605	0.84[EUR][1000 genomes]
rs10810608	0.85[EUR][1000 genomes]
rs10810609	0.85[EUR][1000 genomes]
rs10810612	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10962563	0.84[EUR][1000 genomes]
rs10962564	0.84[EUR][1000 genomes]
rs10962565	0.84[EUR][1000 genomes]
rs10962566	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13285058	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs1330294	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs1330295	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330296	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1330297	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1330302	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs1361074	1.00[CEU][hapmap]
rs1361076	0.85[EUR][1000 genomes]
rs1411429	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1537004	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1544103	1.00[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs1854694	0.84[EUR][1000 genomes]
rs1888205	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1928849	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1970284	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1970285	0.84[EUR][1000 genomes]
rs1980935	0.83[EUR][1000 genomes]
rs1980937	0.84[EUR][1000 genomes]
rs2039187	0.84[EUR][1000 genomes]
rs2039188	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2094781	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs2183408	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2210104	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2225326	0.83[EUR][1000 genomes]
rs2383006	0.85[EUR][1000 genomes]
rs28529611	0.84[EUR][1000 genomes]
rs3850446	0.93[EUR][1000 genomes]
rs3850447	0.84[EUR][1000 genomes]
rs3904154	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4405008	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs4626704	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4961739	0.84[EUR][1000 genomes]
rs4961740	0.84[EUR][1000 genomes]
rs4961742	0.84[EUR][1000 genomes]
rs4961744	0.84[EUR][1000 genomes]
rs4961749	1.00[CEU][hapmap]
rs4961750	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4961751	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4961752	0.81[EUR][1000 genomes]
rs4961753	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs5015536	0.80[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs5015537	0.80[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs5015539	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs5015540	0.80[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs5016917	0.84[EUR][1000 genomes]
rs62541547	0.82[EUR][1000 genomes]
rs6475069	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6475070	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475071	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475073	0.83[EUR][1000 genomes]
rs6475074	1.00[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs6475075	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6475076	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6475077	0.83[EUR][1000 genomes]
rs6475078	0.81[EUR][1000 genomes]
rs7021735	0.84[EUR][1000 genomes]
rs7022131	0.82[EUR][1000 genomes]
rs7028403	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs7028827	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7029195	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029546	0.83[EUR][1000 genomes]
rs7032294	1.00[CEU][hapmap]
rs7034961	1.00[CEU][hapmap];0.82[GIH][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs7035033	0.84[EUR][1000 genomes]
rs7035178	0.84[EUR][1000 genomes]
rs7035732	0.84[EUR][1000 genomes]
rs7038545	0.82[EUR][1000 genomes]
rs7040406	0.93[EUR][1000 genomes]
rs7042146	0.85[EUR][1000 genomes]
rs7047213	0.84[EUR][1000 genomes]
rs7470506	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7850168	0.87[TSI][hapmap]
rs7851438	0.83[EUR][1000 genomes]
rs7853424	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7853541	0.83[EUR][1000 genomes]
rs7853573	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs7853718	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7853764	1.00[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs7853897	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs7855267	0.81[EUR][1000 genomes]
rs7857685	0.84[EUR][1000 genomes]
rs7857721	0.84[EUR][1000 genomes]
rs7857929	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs7858709	0.84[EUR][1000 genomes]
rs7858712	0.83[EUR][1000 genomes]
rs7858914	0.84[EUR][1000 genomes]
rs7859111	0.87[TSI][hapmap]
rs7866023	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7866999	0.80[EUR][1000 genomes]
rs7867001	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867602	0.83[EUR][1000 genomes]
rs7868192	0.81[EUR][1000 genomes]
rs7868606	0.81[EUR][1000 genomes]
rs7868731	0.81[EUR][1000 genomes]
rs7868797	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7869115	0.84[EUR][1000 genomes]
rs7874791	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs944208	0.80[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs9987410	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9987413	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs9987475	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9987476	1.00[CEU][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs9987698	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9987701	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16724400-16729800	Active TSS	Ovary	ovary
2	chr9:16724800-16728800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:16725200-16729400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:16726000-16727800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
5	chr9:16726000-16727800	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr9:16726000-16728200	Active TSS	Colonic Mucosa	Colon
7	chr9:16726200-16727800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr9:16726200-16727800	Active TSS	H1 Cell Line	embryonic stem cell
9	chr9:16726200-16728000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:16726200-16728000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:16726200-16728000	Bivalent/Poised TSS	Fetal Brain Male	brain
12	chr9:16726400-16727800	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr9:16726400-16727800	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr9:16726400-16727800	Active TSS	Fetal Muscle Leg	muscle
15	chr9:16726400-16727800	Active TSS	A549	lung
16	chr9:16726400-16727800	Active TSS	HSMM	muscle
17	chr9:16726400-16727800	Active TSS	NH-A	brain
18	chr9:16726400-16727800	Active TSS	NHDF-Ad	bronchial
19	chr9:16726400-16727800	Active TSS	NHLF	lung
20	chr9:16726400-16727800	Active TSS	Osteobl	bone
21	chr9:16726400-16728000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:16726400-16728000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:16726400-16728000	Active TSS	Colon Smooth Muscle	Colon
24	chr9:16726400-16728000	Active TSS	Fetal Lung	lung
25	chr9:16726400-16728200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr9:16726400-16728200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:16726400-16728400	Active TSS	HSMMtube	muscle
28	chr9:16726400-16729200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:16726600-16727800	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr9:16726600-16727800	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr9:16726600-16727800	Active TSS	Brain Substantia Nigra	brain
32	chr9:16726600-16727800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
33	chr9:16726600-16727800	Active TSS	Placenta	Placenta
34	chr9:16726600-16727800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
35	chr9:16726600-16727800	Active TSS	HMEC	breast
36	chr9:16726600-16728000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:16726600-16728000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
38	chr9:16726600-16728000	Active TSS	Esophagus	oesophagus
39	chr9:16726600-16728000	Active TSS	Stomach Smooth Muscle	stomach
40	chr9:16726600-16728200	Active TSS	Aorta	Aorta
41	chr9:16726600-16728200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
42	chr9:16726600-16728200	Active TSS	Fetal Muscle Trunk	muscle
43	chr9:16726600-16728200	Active TSS	Psoas Muscle	Psoas
44	chr9:16726600-16728200	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr9:16726600-16728200	Active TSS	Rectal Smooth Muscle	rectum
46	chr9:16726600-16728200	Active TSS	Right Atrium	heart
47	chr9:16726600-16728200	Active TSS	Right Ventricle	heart
48	chr9:16726800-16727800	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr9:16726800-16727800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:16726800-16727800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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