Variant report

Variant	rs7850168
Chromosome Location	chr9:16766118-16766119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10732336	0.83[AMR][1000 genomes]
rs10733321	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10738459	0.82[EUR][1000 genomes]
rs10756808	0.82[EUR][1000 genomes]
rs10756809	0.82[EUR][1000 genomes]
rs10810612	0.82[EUR][1000 genomes]
rs10810618	0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810623	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13289196	0.87[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330295	0.83[AMR][1000 genomes]
rs1330300	0.88[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1330301	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360285	0.87[TSI][hapmap]
rs1537002	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1928850	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2026803	1.00[ASN][1000 genomes]
rs2094781	0.82[EUR][1000 genomes]
rs2243614	1.00[JPT][hapmap]
rs2243836	1.00[ASN][1000 genomes]
rs2254193	1.00[JPT][hapmap]
rs2254468	1.00[JPT][hapmap]
rs2383006	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2480924	1.00[ASN][1000 genomes]
rs3927535	1.00[ASW][hapmap];0.87[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs4961495	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961756	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961759	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5015536	0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs5015537	0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs5015539	0.82[EUR][1000 genomes]
rs5015540	0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs6475069	0.83[AMR][1000 genomes]
rs6475070	0.83[AMR][1000 genomes]
rs6475071	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs6475079	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475081	0.87[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7029195	0.83[AMR][1000 genomes]
rs7032294	0.91[AMR][1000 genomes]
rs7037653	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855267	0.82[EUR][1000 genomes]
rs7859111	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7860932	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs7863885	1.00[JPT][hapmap]
rs7868192	0.82[EUR][1000 genomes]
rs7868606	0.82[EUR][1000 genomes]
rs7868731	0.82[EUR][1000 genomes]
rs7868797	0.82[EUR][1000 genomes]
rs7873181	0.87[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7874791	0.83[AMR][1000 genomes]
rs9407777	1.00[ASN][1000 genomes]
rs944208	0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs9987410	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16745400-16774800	Weak transcription	Osteobl	bone
2	chr9:16745600-16766200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16754000-16766600	Weak transcription	NHDF-Ad	bronchial
4	chr9:16754000-16787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:16754400-16767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16755800-16778400	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:16758400-16766200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:16758600-16769200	Weak transcription	Ovary	ovary
9	chr9:16762600-16786800	Weak transcription	NHLF	lung
10	chr9:16764200-16766400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:16765200-16766400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:16765200-16768200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:16765200-16768400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:16765600-16767400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links