Variant report

Variant	rs10738459
Chromosome Location	chr9:16758212-16758213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10283606	0.80[CEU][hapmap]
rs10732336	0.80[CEU][hapmap]
rs10733317	0.80[CEU][hapmap]
rs10733318	0.80[CEU][hapmap];0.80[ASN][1000 genomes]
rs10733319	0.80[CEU][hapmap];0.84[ASN][1000 genomes]
rs10738450	0.80[CEU][hapmap];0.81[AMR][1000 genomes]
rs10738452	0.85[CHB][hapmap]
rs10738453	0.80[CEU][hapmap]
rs10738455	0.84[ASN][1000 genomes]
rs10738456	0.84[ASN][1000 genomes]
rs10738458	0.84[ASN][1000 genomes]
rs10756791	0.85[CHB][hapmap]
rs10756802	0.84[ASN][1000 genomes]
rs10756803	0.84[ASN][1000 genomes]
rs10756804	0.84[ASN][1000 genomes]
rs10756805	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10756806	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10756808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756809	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810597	0.85[CHB][hapmap]
rs10810605	0.84[ASN][1000 genomes]
rs10810608	0.86[EUR][1000 genomes]
rs10810609	0.86[EUR][1000 genomes]
rs10810612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810618	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs10962563	0.84[ASN][1000 genomes]
rs10962564	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10962565	0.84[ASN][1000 genomes]
rs10962566	0.80[ASN][1000 genomes]
rs11999316	0.95[ASN][1000 genomes]
rs12002953	0.84[ASN][1000 genomes]
rs12004872	0.82[ASN][1000 genomes]
rs13285058	0.80[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs13299069	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13300274	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330294	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1330296	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1330297	0.80[CEU][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1330298	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1330300	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs1330302	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs1360285	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs1361074	0.80[CEU][hapmap]
rs1411429	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs1411430	0.85[CHB][hapmap]
rs1537004	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs1544103	0.80[CEU][hapmap];0.81[AMR][1000 genomes]
rs16934964	1.00[CHB][hapmap]
rs1888205	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs1928849	0.80[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1928850	0.84[EUR][1000 genomes]
rs1970284	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs1970285	1.00[CHB][hapmap]
rs1980935	0.84[ASN][1000 genomes]
rs1980936	0.84[ASN][1000 genomes]
rs1980937	0.80[ASN][1000 genomes]
rs2039187	0.80[ASN][1000 genomes]
rs2039188	0.80[CEU][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2094781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150090	0.85[CHB][hapmap]
rs2183408	0.80[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs2210104	0.80[CEU][hapmap];0.81[AMR][1000 genomes]
rs2275255	0.85[CHB][hapmap]
rs2383006	0.95[EUR][1000 genomes]
rs2840290	0.84[CHB][hapmap]
rs28529611	0.84[ASN][1000 genomes]
rs3850446	0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs3850447	0.85[CHB][hapmap]
rs3904154	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs4405008	0.80[CEU][hapmap]
rs4626704	0.81[AMR][1000 genomes]
rs4961749	0.80[CEU][hapmap]
rs4961750	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs4961751	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs4961753	0.80[CEU][hapmap];0.84[ASN][1000 genomes]
rs5015536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5015537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5015539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5015540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5016911	0.84[ASN][1000 genomes]
rs5016917	0.84[ASN][1000 genomes]
rs6475069	0.80[CEU][hapmap]
rs6475071	0.80[CEU][hapmap]
rs6475074	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475075	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475076	0.80[CEU][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475077	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475078	0.84[ASN][1000 genomes]
rs7021735	0.80[ASN][1000 genomes]
rs7022131	0.81[AMR][1000 genomes]
rs7028827	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7029546	0.81[AMR][1000 genomes]
rs7032294	0.80[CEU][hapmap]
rs7034961	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs7035033	0.80[ASN][1000 genomes]
rs7035178	0.84[ASN][1000 genomes]
rs7038545	0.84[ASN][1000 genomes]
rs7040406	0.84[EUR][1000 genomes]
rs7042146	0.81[AMR][1000 genomes]
rs7043797	0.80[ASN][1000 genomes]
rs7470506	0.84[ASN][1000 genomes]
rs7850168	0.82[EUR][1000 genomes]
rs7851438	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7853424	0.80[CEU][hapmap]
rs7853541	0.80[ASN][1000 genomes]
rs7853573	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7853718	0.80[CEU][hapmap];0.84[ASN][1000 genomes]
rs7853764	0.80[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs7853897	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7855267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7857685	0.80[ASN][1000 genomes]
rs7857721	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs7857929	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs7859111	0.82[EUR][1000 genomes]
rs7866999	0.80[ASN][1000 genomes]
rs7867602	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7868192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874791	0.80[CEU][hapmap]
rs944208	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9987413	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9987475	0.80[CEU][hapmap];0.84[ASN][1000 genomes]
rs9987476	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9987698	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9987701	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16745400-16774800	Weak transcription	Osteobl	bone
2	chr9:16745600-16766200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16754000-16766600	Weak transcription	NHDF-Ad	bronchial
4	chr9:16754000-16787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:16754400-16767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16755800-16778400	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:16758000-16758400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:16758000-16758600	Enhancers	Ovary	ovary
9	chr9:16758200-16758400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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