Variant report

Variant	rs1361074
Chromosome Location	chr9:16711500-16711501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10283606	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10732336	1.00[CEU][hapmap]
rs10733317	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10733318	1.00[CEU][hapmap]
rs10733319	1.00[CEU][hapmap]
rs10738450	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10738451	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs10738452	1.00[YRI][hapmap]
rs10738453	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10738454	0.83[AMR][1000 genomes]
rs10738459	0.80[CEU][hapmap]
rs10756791	0.84[YRI][hapmap]
rs10756795	0.81[AMR][1000 genomes]
rs10756805	1.00[CEU][hapmap]
rs10756806	1.00[CEU][hapmap]
rs10756808	0.89[CEU][hapmap]
rs10756809	0.88[CEU][hapmap]
rs10810612	0.89[CEU][hapmap]
rs10962566	1.00[CEU][hapmap]
rs13285058	1.00[CEU][hapmap]
rs1330294	1.00[CEU][hapmap]
rs1330295	0.89[CEU][hapmap]
rs1330296	1.00[CEU][hapmap]
rs1330297	1.00[CEU][hapmap]
rs1330302	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1360285	1.00[CEU][hapmap]
rs1361076	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1411429	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs1537004	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs1544103	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1854694	0.83[AMR][1000 genomes]
rs1888205	1.00[CEU][hapmap]
rs1928849	1.00[CEU][hapmap]
rs1970284	1.00[CEU][hapmap]
rs2039188	1.00[CEU][hapmap]
rs2094781	0.80[CEU][hapmap]
rs2183408	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2210104	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2225327	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3850446	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3850447	0.83[AMR][1000 genomes]
rs3904154	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs4405008	1.00[CEU][hapmap]
rs4626704	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4961749	1.00[CEU][hapmap]
rs4961750	1.00[CEU][hapmap]
rs4961751	1.00[CEU][hapmap]
rs4961753	1.00[CEU][hapmap]
rs5015536	0.80[CEU][hapmap]
rs5015537	0.80[CEU][hapmap]
rs5015539	0.88[CEU][hapmap]
rs5015540	0.80[CEU][hapmap];0.84[AMR][1000 genomes]
rs6475069	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6475070	1.00[CEU][hapmap]
rs6475071	1.00[CEU][hapmap]
rs6475074	1.00[CEU][hapmap]
rs6475075	1.00[CEU][hapmap]
rs6475076	1.00[CEU][hapmap]
rs7022131	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7028403	0.89[CEU][hapmap]
rs7028827	1.00[CEU][hapmap]
rs7029195	1.00[CEU][hapmap]
rs7029546	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7029771	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7032294	1.00[CEU][hapmap]
rs7034961	1.00[CEU][hapmap]
rs7040406	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7042146	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7470506	1.00[CEU][hapmap]
rs7853424	1.00[CEU][hapmap]
rs7853573	1.00[CEU][hapmap]
rs7853718	1.00[CEU][hapmap]
rs7853764	1.00[CEU][hapmap]
rs7853897	1.00[CEU][hapmap]
rs7857929	1.00[CEU][hapmap]
rs7868797	0.80[CEU][hapmap]
rs7874791	1.00[CEU][hapmap]
rs944208	0.80[CEU][hapmap]
rs9987413	1.00[CEU][hapmap]
rs9987475	1.00[CEU][hapmap]
rs9987476	1.00[CEU][hapmap]
rs9987698	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16705600-16713800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:16707400-16712000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:16707800-16713200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:16708000-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:16708200-16713200	Enhancers	A549	lung
6	chr9:16708200-16716200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:16709000-16712000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:16709000-16726000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:16709200-16711800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr9:16709200-16712600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:16709200-16712800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:16709200-16712800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:16709200-16713800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:16709200-16713800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:16709200-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:16709400-16711800	Enhancers	Fetal Brain Male	brain
17	chr9:16709400-16712600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:16709400-16712800	Weak transcription	Ovary	ovary
19	chr9:16709400-16714200	Weak transcription	Colon Smooth Muscle	Colon
20	chr9:16709400-16714400	Weak transcription	Osteobl	bone
21	chr9:16709400-16718600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:16709400-16719000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:16709600-16712800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:16709600-16714600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:16709600-16714600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:16709600-16714800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr9:16709600-16725800	Weak transcription	Fetal Stomach	stomach
28	chr9:16709800-16711600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr9:16710200-16711600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr9:16710400-16719000	Weak transcription	NH-A	brain
31	chr9:16710600-16711600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:16710800-16711800	Enhancers	HSMM	muscle
33	chr9:16711000-16712200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:16711000-16714200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr9:16711200-16712600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:16711200-16713600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr9:16711200-16713800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:16711200-16714200	Weak transcription	NHLF	lung
39	chr9:16711200-16718000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:16711400-16711800	Enhancers	Fetal Brain Female	brain
41	chr9:16711400-16712000	Enhancers	Brain Germinal Matrix	brain
42	chr9:16711400-16712600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr9:16711400-16713400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr9:16711400-16714000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr9:16711400-16714400	Weak transcription	NHDF-Ad	bronchial
46	chr9:16711400-16715000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr9:16711400-16718000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr9:16711400-16718000	Weak transcription	Fetal Lung	lung
49	chr9:16711400-16726600	Weak transcription	Psoas Muscle	Psoas

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