Variant report

Variant	rs5017203
Chromosome Location	chr16:48239883-48239884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48238882..48241120-chr16:48241985..48244745,3	K562	blood:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10163354	0.93[ASN][1000 genomes]
rs10163462	0.93[ASN][1000 genomes]
rs10521167	1.00[EUR][1000 genomes]
rs11076564	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11859911	1.00[EUR][1000 genomes]
rs11861031	0.93[ASN][1000 genomes]
rs11861348	0.99[EUR][1000 genomes]
rs11861379	1.00[EUR][1000 genomes]
rs11863133	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11863233	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11863236	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11863325	0.93[ASN][1000 genomes]
rs11863414	1.00[EUR][1000 genomes]
rs11865596	1.00[EUR][1000 genomes]
rs11866225	1.00[EUR][1000 genomes]
rs11866251	0.93[ASN][1000 genomes]
rs11866312	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11866529	1.00[ASN][1000 genomes]
rs13331031	1.00[EUR][1000 genomes]
rs13332304	1.00[EUR][1000 genomes]
rs13334052	1.00[EUR][1000 genomes]
rs13336264	0.93[ASN][1000 genomes]
rs13336542	1.00[EUR][1000 genomes]
rs13336625	1.00[EUR][1000 genomes]
rs13336759	1.00[EUR][1000 genomes]
rs13337955	1.00[EUR][1000 genomes]
rs13338105	1.00[EUR][1000 genomes]
rs16945916	0.93[ASN][1000 genomes]
rs16945917	0.93[ASN][1000 genomes]
rs16945919	0.93[ASN][1000 genomes]
rs16945972	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16945974	0.99[EUR][1000 genomes]
rs16945988	1.00[EUR][1000 genomes]
rs16945990	1.00[EUR][1000 genomes]
rs16946006	1.00[EUR][1000 genomes]
rs16946011	0.97[EUR][1000 genomes]
rs16946014	0.97[EUR][1000 genomes]
rs16946122	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17743256	0.93[ASN][1000 genomes]
rs2129245	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28376623	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28503414	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28515165	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28605399	1.00[EUR][1000 genomes]
rs28626252	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28654935	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28684834	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28696036	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28842015	0.97[EUR][1000 genomes]
rs28849445	0.97[EUR][1000 genomes]
rs41280939	0.93[ASN][1000 genomes]
rs4325548	0.97[EUR][1000 genomes]
rs4340327	0.97[EUR][1000 genomes]
rs57912486	0.93[ASN][1000 genomes]
rs58938063	0.97[EUR][1000 genomes]
rs60431412	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62058521	0.93[ASN][1000 genomes]
rs62058522	0.93[ASN][1000 genomes]
rs62058526	0.93[ASN][1000 genomes]
rs62058528	0.93[ASN][1000 genomes]
rs6500339	0.85[ASN][1000 genomes]
rs70973926	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7184452	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7184831	0.93[ASN][1000 genomes]
rs7186982	0.96[EUR][1000 genomes]
rs7187166	0.97[EUR][1000 genomes]
rs7187233	0.93[ASN][1000 genomes]
rs7191181	0.96[EUR][1000 genomes]
rs7191844	0.93[ASN][1000 genomes]
rs7202089	0.97[EUR][1000 genomes]
rs7203378	0.97[EUR][1000 genomes]
rs7203432	0.97[EUR][1000 genomes]
rs7203695	0.93[ASN][1000 genomes]
rs7206909	0.93[ASN][1000 genomes]
rs73540901	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73542903	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73542904	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73546434	1.00[EUR][1000 genomes]
rs73546437	1.00[EUR][1000 genomes]
rs73546439	1.00[EUR][1000 genomes]
rs73555628	0.97[EUR][1000 genomes]
rs73555630	0.97[EUR][1000 genomes]
rs73555643	0.97[EUR][1000 genomes]
rs7359477	1.00[EUR][1000 genomes]
rs74018298	0.85[ASN][1000 genomes]
rs74018300	0.93[ASN][1000 genomes]
rs8043685	0.97[EUR][1000 genomes]
rs8043751	1.00[EUR][1000 genomes]
rs8046814	1.00[ASN][1000 genomes]
rs8047091	1.00[ASN][1000 genomes]
rs8047397	1.00[EUR][1000 genomes]
rs8049398	0.86[EUR][1000 genomes]
rs8050120	0.93[ASN][1000 genomes]
rs8051016	1.00[ASN][1000 genomes]
rs8051205	1.00[ASN][1000 genomes]
rs8051546	1.00[EUR][1000 genomes]
rs8051852	1.00[EUR][1000 genomes]
rs8054117	0.97[EUR][1000 genomes]
rs8054444	0.97[EUR][1000 genomes]
rs8055128	0.97[EUR][1000 genomes]
rs8056100	1.00[EUR][1000 genomes]
rs8056143	1.00[EUR][1000 genomes]
rs8056692	0.84[EUR][1000 genomes]
rs8057475	1.00[ASN][1000 genomes]
rs8058396	0.97[EUR][1000 genomes]
rs8060696	1.00[EUR][1000 genomes]
rs8060722	0.99[EUR][1000 genomes]
rs8062407	0.97[EUR][1000 genomes]
rs957881	0.93[ASN][1000 genomes]
rs9926206	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9932328	0.97[EUR][1000 genomes]
rs9932850	1.00[ASN][1000 genomes]
rs9934833	0.97[EUR][1000 genomes]
rs9938414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48230200-48240400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:48237200-48240400	Weak transcription	Adipose Nuclei	Adipose
3	chr16:48239400-48241200	Enhancers	Liver	Liver
4	chr16:48239400-48245800	Weak transcription	Right Atrium	heart
5	chr16:48239600-48240600	Weak transcription	Stomach Mucosa	stomach
6	chr16:48239600-48241600	Enhancers	HepG2	liver
7	chr16:48239600-48250000	Weak transcription	Pancreas	Pancrea
8	chr16:48239800-48240200	Weak transcription	A549	lung
9	chr16:48239800-48240400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links