The 2.0 version of rSNPBase

Variant report

Variant rs73555643
Chromosome Location chr16:48277981-48277982
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:48277400-48278000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
2 chr16:48277400-48278000 Enhancers Primary T helper naive cells from peripheral blood blood
3 chr16:48277400-48278000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
4 chr16:48277400-48278000 Enhancers HMEC breast
5 chr16:48277400-48278200 Active TSS Primary T helper naive cells fromperipheralblood blood
6 chr16:48277400-48278800 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr16:48277400-48278800 Active TSS Rectal Mucosa Donor 29 rectum
8 chr16:48277400-48278800 Active TSS Rectal Mucosa Donor 31 rectum
9 chr16:48277400-48279000 Active TSS Colon Smooth Muscle Colon
10 chr16:48277400-48279000 Active TSS Duodenum Smooth Muscle Duodenum
11 chr16:48277400-48279000 Active TSS Rectal Smooth Muscle rectum
12 chr16:48277400-48279200 Active TSS Breast Myoepithelial Primary Cells Breast
13 chr16:48277400-48279200 Active TSS A549 lung
14 chr16:48277400-48279400 Active TSS ES-I3 Cell Line embryonic stem cell
15 chr16:48277400-48281400 Active TSS GM12878-XiMat blood
16 chr16:48277600-48278000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr16:48277600-48278000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr16:48277600-48278000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
19 chr16:48277600-48278000 Enhancers Primary T helper 17 cells PMA-I stimulated --
20 chr16:48277600-48278000 Enhancers Pancreas Pancrea
21 chr16:48277600-48278000 Enhancers Skeletal Muscle Female skeletal muscle
22 chr16:48277600-48278000 Enhancers Spleen Spleen
23 chr16:48277600-48278200 Active TSS Primary T regulatory cells fromperipheralblood blood
24 chr16:48277600-48278200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr16:48277600-48278200 Active TSS Skeletal Muscle Male skeletal muscle
26 chr16:48277600-48278200 Enhancers Small Intestine intestine
27 chr16:48277600-48278400 Active TSS Primary B cells from cord blood blood
28 chr16:48277600-48278600 Active TSS Stomach Smooth Muscle stomach
29 chr16:48277600-48278800 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
30 chr16:48277600-48278800 Active TSS Primary T helper cells fromperipheralblood blood
31 chr16:48277600-48278800 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
32 chr16:48277600-48278800 Active TSS Brain Cingulate Gyrus brain
33 chr16:48277600-48278800 Active TSS Brain Hippocampus Middle brain
34 chr16:48277600-48278800 Active TSS Brain Dorsolateral Prefrontal Cortex brain
35 chr16:48277600-48278800 Active TSS Fetal Brain Female brain
36 chr16:48277600-48279000 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr16:48277600-48279000 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
38 chr16:48277600-48279000 Active TSS Brain Angular Gyrus brain
39 chr16:48277600-48279000 Active TSS Colonic Mucosa Colon
40 chr16:48277600-48279000 Active TSS Fetal Adrenal Gland Adrenal Gland
41 chr16:48277600-48279000 Active TSS Fetal Kidney kidney
42 chr16:48277600-48279000 Active TSS Fetal Lung lung
43 chr16:48277600-48279000 Active TSS Placenta Placenta
44 chr16:48277600-48279200 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr16:48277600-48279200 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
46 chr16:48277600-48279200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr16:48277600-48279200 Active TSS Muscle Satellite Cultured Cells --
48 chr16:48277600-48279200 Active TSS Brain Anterior Caudate brain
49 chr16:48277600-48279200 Active TSS Esophagus oesophagus
50 chr16:48277600-48279200 Active TSS Psoas Muscle Psoas

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Last update: Aug 31, 2015