Variant report
| Variant | rs502256 |
|---|---|
| Chromosome Location | chr6:49688150-49688151 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000124490 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs1621948 | 0.83[ASN][1000 genomes] |
| rs184857 | 0.83[ASN][1000 genomes] |
| rs360541 | 0.83[ASN][1000 genomes] |
| rs360542 | 0.83[ASN][1000 genomes] |
| rs360544 | 0.83[ASN][1000 genomes] |
| rs360545 | 0.83[ASN][1000 genomes] |
| rs360546 | 0.83[ASN][1000 genomes] |
| rs360547 | 0.82[ASN][1000 genomes] |
| rs360548 | 0.83[ASN][1000 genomes] |
| rs483914 | 0.83[ASN][1000 genomes] |
| rs488132 | 0.83[ASN][1000 genomes] |
| rs512299 | 0.83[ASN][1000 genomes] |
| rs521489 | 0.83[ASN][1000 genomes] |
| rs521492 | 0.83[ASN][1000 genomes] |
| rs553584 | 0.83[ASN][1000 genomes] |
| rs555103 | 0.83[ASN][1000 genomes] |
| rs56148648 | 0.81[ASN][1000 genomes] |
| rs571257 | 0.83[ASN][1000 genomes] |
| rs584490 | 0.83[ASN][1000 genomes] |
| rs597544 | 0.83[ASN][1000 genomes] |
| rs614217 | 0.81[ASN][1000 genomes] |
| rs623996 | 0.81[ASN][1000 genomes] |
| rs626221 | 0.83[ASN][1000 genomes] |
| rs633319 | 0.81[ASN][1000 genomes] |
| rs643775 | 0.83[ASN][1000 genomes] |
| rs693929 | 0.83[ASN][1000 genomes] |
| rs696717 | 0.83[ASN][1000 genomes] |
| rs699959 | 0.83[ASN][1000 genomes] |
| rs699960 | 0.83[ASN][1000 genomes] |
| rs699962 | 0.83[ASN][1000 genomes] |
| rs699972 | 0.81[ASN][1000 genomes] |
| rs699974 | 0.83[ASN][1000 genomes] |
| rs699977 | 0.81[ASN][1000 genomes] |
| rs699982 | 0.81[ASN][1000 genomes] |
| rs699990 | 0.81[ASN][1000 genomes] |
| rs699991 | 0.81[ASN][1000 genomes] |
| rs7760595 | 0.83[ASN][1000 genomes] |
| rs780445 | 0.83[ASN][1000 genomes] |
| rs812969 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49681800-49694200 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
