Variant report

Variant	rs614217
Chromosome Location	chr8:68316099-68316100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68312439..68315164-chr8:68315835..68318294,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1621948	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs168623	0.90[ASN][1000 genomes]
rs183115	0.93[ASN][1000 genomes]
rs184857	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360541	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360542	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360544	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360545	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360546	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360547	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs360548	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360555	0.93[ASN][1000 genomes]
rs483914	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs488132	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs500032	0.91[ASN][1000 genomes]
rs502256	0.81[ASN][1000 genomes]
rs512299	0.98[ASN][1000 genomes]
rs521489	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs521492	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs553584	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs555103	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56085173	0.91[ASN][1000 genomes]
rs56148648	0.95[ASN][1000 genomes]
rs571257	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs584490	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs584747	0.91[ASN][1000 genomes]
rs597544	0.98[ASN][1000 genomes]
rs623996	0.95[ASN][1000 genomes]
rs626221	0.98[ASN][1000 genomes]
rs633319	0.95[ASN][1000 genomes]
rs643775	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs659190	0.93[ASN][1000 genomes]
rs670624	0.98[ASN][1000 genomes]
rs693929	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs696717	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs699959	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs699960	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs699962	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs699972	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs699974	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs699977	0.95[ASN][1000 genomes]
rs699982	0.95[ASN][1000 genomes]
rs699990	0.95[ASN][1000 genomes]
rs699991	0.95[ASN][1000 genomes]
rs699993	0.93[ASN][1000 genomes]
rs699994	0.93[ASN][1000 genomes]
rs699996	0.91[ASN][1000 genomes]
rs7760595	0.98[ASN][1000 genomes]
rs780445	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs812969	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv518005	chr8:68312818-68319668	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3390977	chr8:68314623-68317171	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3418562	chr8:68314698-68317071	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3436024	chr8:68315198-68316696	Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68309600-68327200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:68314200-68317600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr8:68314200-68317800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:68314200-68317800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr8:68314200-68323000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:68314400-68317600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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