Variant report

Variant	rs5030490
Chromosome Location	chr11:36534185-36534186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1159233	0.87[EUR][1000 genomes]
rs1399599	0.85[AMR][1000 genomes]
rs16928973	0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151013	0.85[AMR][1000 genomes]
rs4151024	0.85[AMR][1000 genomes]
rs4151044	0.85[AMR][1000 genomes]
rs5030493	0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5030495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030497	0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030504	0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030507	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36532600-36534200	Enhancers	HepG2	liver
2	chr11:36532600-36534200	Enhancers	HUVEC	blood vessel
3	chr11:36532600-36534600	Enhancers	Fetal Intestine Large	intestine
4	chr11:36532600-36534800	Enhancers	Fetal Intestine Small	intestine
5	chr11:36532600-36535400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:36534000-36535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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