Variant report

Variant	rs1399599
Chromosome Location	chr11:36608272-36608273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1022366	0.91[EUR][1000 genomes]
rs11033708	1.00[JPT][hapmap]
rs12277943	1.00[EUR][1000 genomes]
rs12281426	0.91[EUR][1000 genomes]
rs12419750	1.00[JPT][hapmap]
rs1518743	0.92[EUR][1000 genomes]
rs1518744	0.91[EUR][1000 genomes]
rs1581277	0.91[EUR][1000 genomes]
rs16928973	0.85[AMR][1000 genomes]
rs16929104	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929106	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929150	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929190	1.00[EUR][1000 genomes]
rs16929212	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929216	1.00[JPT][hapmap]
rs16929256	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929265	1.00[EUR][1000 genomes]
rs16929271	1.00[EUR][1000 genomes]
rs16929274	1.00[EUR][1000 genomes]
rs16929337	0.91[EUR][1000 genomes]
rs16929341	0.91[EUR][1000 genomes]
rs16929343	0.82[EUR][1000 genomes]
rs16929405	0.82[EUR][1000 genomes]
rs17632113	0.92[EUR][1000 genomes]
rs17637763	0.92[EUR][1000 genomes]
rs2030251	0.91[EUR][1000 genomes]
rs2048992	0.82[EUR][1000 genomes]
rs2088511	1.00[EUR][1000 genomes]
rs2101987	1.00[EUR][1000 genomes]
rs2422363	0.91[EUR][1000 genomes]
rs35908685	1.00[EUR][1000 genomes]
rs4151013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151024	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030490	0.85[AMR][1000 genomes]
rs5030495	0.85[AMR][1000 genomes]
rs5030497	0.85[AMR][1000 genomes]
rs5030499	0.85[AMR][1000 genomes]
rs5030504	0.85[AMR][1000 genomes]
rs58327863	1.00[EUR][1000 genomes]
rs61541121	1.00[EUR][1000 genomes]
rs7924384	0.91[EUR][1000 genomes]
rs7952663	0.91[EUR][1000 genomes]
rs975487	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36605800-36609400	Weak transcription	Fetal Thymus	thymus
2	chr11:36607800-36611000	Enhancers	Dnd41	blood
3	chr11:36608200-36608400	Enhancers	Thymus	Thymus

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